CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.K02654
(
Eucalyptus grandis
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Eucgr.K02654
T344807_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.846
0.420
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.837
0.420
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.827
0.399
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.K02654.1
TCP
114
256
SSKKDRHSKINTAQGMRDRRMRLSVEVAREFFNLQDMLGLDKASKTIKWLLVKSTPAIKEVARGLQKTKNRESIPIMSVPSRSEREMMPEIGRIAKDNQQETIAKKRKVKQSRKTVFRPTGRESRAKARERAKQRTREKMMLQ
Links
Other
TCP
family TFs
Other
Eucalyptus grandis
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy