evm.TU.supercontig_1401.1 (Carica papaya)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 evm.TU.supercontig_1401.1 T344812_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.910 0.468
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.872 0.392
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.865 0.424
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_1401.1 TCP 129 294

Links

Other TCP family TFs
Other Carica papaya TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.905
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.885
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.920
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.871
TCP1 Arabidopsis thaliana AT1G67260 D 0.872
BRC2 Arabidopsis thaliana AT1G68800 I 0.920
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.909
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.850
Bo6g099040 Brassica oleracea Bo6g099040 I 0.874
Bo2g055640 Brassica oleracea Bo2g055640 I 0.843
Bo6g103670 Brassica oleracea Bo6g103670 I 0.868
Bo2g061250 Brassica oleracea Bo2g061250 I 0.908
Bra034010 Brassica rapa Bra034010 I 0.847
Bra004212 Brassica rapa Bra004212 I 0.878
Bra004097 Brassica rapa Bra004097 I 0.857
Bra038350 Brassica rapa Bra038350 I 0.908
PK19717.1 Cannabis sativa PK19717.1 D 0.865
PK12240.1 Cannabis sativa PK12240.1 D 0.910
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.842
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.909
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.909
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.839
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.885
Cla019282 Citrullus lanatus Cla019282 N 0.824
Cla016709 Citrullus lanatus Cla016709 I 0.907
Cla007227 Citrullus lanatus Cla007227 I 0.915
Cla002355 Citrullus lanatus Cla002355 I 0.925
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.866
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.939
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.939
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.866
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.917
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.900
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.925
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.883
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.828
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.885
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.878
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.868
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.925
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.871
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.861
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.845
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.897
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.893
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.897
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.893
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.948
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.890
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.825
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.822
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.898
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.886
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.876
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.879
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.895
MDP0000224810 Malus domestica MDP0000224810 N 0.837
MDP0000173048 Malus domestica MDP0000173048 I 0.931
MDP0000272980 Malus domestica MDP0000272980 I 0.926
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.883
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.879
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.939
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.903
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.897
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.892
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.885
mgf026636m Mimulus guttatus mgf026636m I 0.883
mgf022233m Mimulus guttatus mgf022233m I 0.854
mgf019480m Mimulus guttatus mgf019480m I 0.872
mgf024687m Mimulus guttatus mgf024687m I 0.834
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.873
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.883
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.878
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.879
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.936
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.946
Pm030202 Prunus mume Pm030202 I 0.837
Pm015499 Prunus mume Pm015499 I 0.859
Pm029002 Prunus mume Pm029002 I 0.926
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.860
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.926
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.837
29738.m001041 Ricinus communis 29738.m001041 I 0.946
30174.m008721 Ricinus communis 30174.m008721 I 0.867
30167.m000856 Ricinus communis 30167.m000856 I 0.889
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.864
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.890
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.864
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.864
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.949
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.883
Si033183m.g Setaria italica Si033183m.g I 0.825
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.870
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.870
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.921
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.842
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.912
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.878
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.924
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.842
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.855
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.912
TCM_019518 Theobroma cacao TCM_019518 I 0.883
TCM_011874 Theobroma cacao TCM_011874 I 0.947
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.833
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.870
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.935