gene03882-v1.0-hybrid (Fragaria vesca)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 gene03882-v1.0-hybrid T344831_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.953 0.511
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.879 0.445
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.873 0.453
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna03882.1-v1.0-hybrid TCP 85 221

Links

Other TCP family TFs
Other Fragaria vesca TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK12240.1 Cannabis sativa PK12240.1 D 0.953
BRC2 Arabidopsis thaliana AT1G68800 I 0.946
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.946
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.944
MDP0000272980 Malus domestica MDP0000272980 I 0.944
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.938
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.938
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.938
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.938
MDP0000173048 Malus domestica MDP0000173048 I 0.935
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.934
29738.m001041 Ricinus communis 29738.m001041 I 0.932
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.932
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.931
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.931
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.931
Pm029002 Prunus mume Pm029002 I 0.929
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.929
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.927
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.925
Cla002355 Citrullus lanatus Cla002355 I 0.924
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.924
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.922
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.920
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.919
TCM_011874 Theobroma cacao TCM_011874 I 0.916
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.916
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.914
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.914
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.914
Bra004097 Brassica rapa Bra004097 I 0.913
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.912
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.910
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.910
30167.m000856 Ricinus communis 30167.m000856 I 0.910
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.909
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.908
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.906
Cla016709 Citrullus lanatus Cla016709 I 0.906
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.905
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.904
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.903
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.901
Cla007227 Citrullus lanatus Cla007227 I 0.899
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.898
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.898
mgf019480m Mimulus guttatus mgf019480m I 0.898
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.897
Bo6g103670 Brassica oleracea Bo6g103670 I 0.897
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.896
Bra004212 Brassica rapa Bra004212 I 0.894
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.893
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.892
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.890
Bra038350 Brassica rapa Bra038350 I 0.889
mgf022233m Mimulus guttatus mgf022233m I 0.889
Bo2g061250 Brassica oleracea Bo2g061250 I 0.889
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.888
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.887
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.885
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.885
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.884
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.881
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.880
TCP1 Arabidopsis thaliana AT1G67260 D 0.879
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.877
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.876
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.875
PK19717.1 Cannabis sativa PK19717.1 D 0.873
mgf026636m Mimulus guttatus mgf026636m I 0.873
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.872
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.871
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.868
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.866
TCM_019518 Theobroma cacao TCM_019518 I 0.866
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.865
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.865
mgf024687m Mimulus guttatus mgf024687m I 0.865
Bo6g099040 Brassica oleracea Bo6g099040 I 0.862
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.862
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.861
Bra034010 Brassica rapa Bra034010 I 0.860
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.858
Bo2g055640 Brassica oleracea Bo2g055640 I 0.857
TCM_012252 Theobroma cacao TCM_012252 I 0.854
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.854
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.853
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.853
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.853
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.852
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.852
Pm015499 Prunus mume Pm015499 I 0.852
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.851
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.848
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.848
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.848
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.847
30174.m008721 Ricinus communis 30174.m008721 I 0.846
Si033183m.g Setaria italica Si033183m.g I 0.845
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.845
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.844
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.843
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.843
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.840
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.839
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.839
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.839
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.839
Pm030202 Prunus mume Pm030202 I 0.839
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.837
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.837
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.837
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.836
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.836
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.836
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.836
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.834
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.834
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.833
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.833
OS09G0410500 Oryza sativa OS09G0410500 I 0.833
OBART09G10040 Oryza barthii OBART09G10040 I 0.833
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.833
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.832
Cla019282 Citrullus lanatus Cla019282 N 0.832
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.832
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.830
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.830
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.830
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.828
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.826
MDP0000224810 Malus domestica MDP0000224810 N 0.826
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.825
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.825
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.825
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.822