CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene27171-v1.0-hybrid
(
Fragaria vesca
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
gene27171-v1.0-hybrid
T344844_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC
GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.947
0.420
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.947
0.420
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.941
0.395
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.941
0.395
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.941
0.395
OS01G0213800
M11398_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.938
0.420
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY
RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.882
0.318
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.880
0.338
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC
GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.880
0.338
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC
GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.851
0.293
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY
RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.851
0.293
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC
GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.846
0.280
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.834
0.306
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.834
0.306
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna27171.1-v1.0-hybrid
TCP
159
417
TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELPPWNPNSISVQTSASPTAPPTSAAQETQNNSSLHFSMVEAPSSLSANRRASMVGSGVAELVNQNSSNFLPPSMDSDSIADTIKSFFPMGAATTAETPSFHPSYPPDLLSRTSSQSQDLRLSLHSFQDPILLHHHQAHQHQTHHQNEQTFLTPNPLGFDSSAATWTEQHHQQQQQAELNRFQRMLAWSNAGGGDSN
Links
Other
TCP
family TFs
Other
Fragaria vesca
TFs
396 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy