Gorai.009G398700 (Gossypium raimondii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Gorai.009G398700 T344874_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.829 0.554
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.829 0.554
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.829 0.554
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.829 0.554
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G398700.1 TCP 44 99
Gorai.009G398700.2 TCP 44 99
Gorai.009G398700.3 TCP 44 99
Gorai.009G398700.4 TCP 44 99
Gorai.009G398700.5 TCP 44 99

Links

Other TCP family TFs
Other Gossypium raimondii TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O3_09248 Capronia epimyces A1O3_09248 N 0.000
A1O7_07175 Cladophialophora yegresii A1O7_07175 N 0.000
A1O9_01806 Exophiala aquamarina A1O9_01806 N 0.000
G647_02931 Cladophialophora carrionii G647_02931 N 0.000
HMPREF1120_07588 Exophiala dermatitidis HMPREF1120_07588 N 0.000
HMPREF1541_07883 Cyphellophora europaea HMPREF1541_07883 N 0.000
PV04_07596 Capronia semiimmersa PV04_07596 N 0.000
PV06_01288 Exophiala oligosperma PV06_01288 N 0.000
PV07_11175 Cladophialophora immunda PV07_11175 N 0.000
PV08_00236 Exophiala spinifera PV08_00236 N 0.000
PV10_06283 Exophiala mesophila PV10_06283 N 0.000
PV11_00728 Exophiala sideris PV11_00728 N 0.000
Z517_02574 Fonsecaea pedrosoi Z517_02574 N 0.000
Z518_09345 Rhinocladiella mackenziei Z518_09345 N 0.000