Lus10008621.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10008621.g T344889_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.949 0.520
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.949 0.543
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.948 0.488
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.948 0.488
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.948 0.488
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.948 0.488
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.938 0.472
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.934 0.441
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.933 0.457
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.933 0.457
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.930 0.402
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.930 0.402
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.930 0.402
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.927 0.346
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.926 0.378
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.926 0.370
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.925 0.370
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.924 0.386
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.923 0.346
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.923 0.346
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.922 0.370
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.922 0.370
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.922 0.370
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.921 0.386
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.921 0.394
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.919 0.346
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.919 0.346
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.917 0.339
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.916 0.362
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.915 0.339
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.915 0.339
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.915 0.339
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.915 0.339
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.855 0.346
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.855 0.346
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10008621 TCP 1 163

Links

Other TCP family TFs
Other Linum usitatissimum TFs

637 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000015241 Ailuropoda melanoleuca ENSAMEG00000015241 I 0.000
Alligator_sinensis_CCG003098.5 Alligator sinensis Alligator_sinensis_CCG003098.5 I 0.000
ENSAPLG00000005397 Anas platyrhynchos ENSAPLG00000005397 I 0.000
Afo_R005310 Aptenodytes forsteri Afo_R005310 I 0.000
ENSBTAP00000012902-D1 Bos grunniens ENSBTAP00000012902-D1 I 0.000
GTF2I Bos taurus ENSBTAG00000009780 I 0.000
GTF2I Callithrix jacchus ENSCJAG00000016182 I 0.000
Aan_R007260 Calypte anna Aan_R007260 I 0.000
GTF2I Canis familiaris ENSCAFG00000011514 I 0.000
GTF2I Cavia porcellus ENSCPOG00000004071 I 0.000
Cmyd_10014807 Chelonia mydas Cmyd_10014807 I 0.000
ENSCSAG00000018227 Chlorocebus sabaeus ENSCSAG00000018227 I 0.000
ENSDNOG00000000823 Dasypus novemcinctus ENSDNOG00000000823 I 0.000
GTF2I Equus caballus ENSECAG00000020289 I 0.000
GTF2I Felis catus ENSFCAG00000002617 I 0.000
ENSFALG00000007065 Ficedula albicollis ENSFALG00000007065 I 0.000
GTF2I Gallus gallus ENSGALG00000021665 I 0.000
GTF2I Homo sapiens ENSG00000263001 D 0.000
ENSLACG00000018432 Latimeria chalumnae ENSLACG00000018432 I 0.000
GTF2I Loxodonta africana ENSLAFG00000003646 I 0.000
ENSP00000322542 Macaca fascicularis ENSP00000322542 I 0.000
GTF2I Macaca mulatta ENSMMUG00000006823 I 0.000
GTF2I Meleagris gallopavo ENSMGAG00000002373 I 0.000
GTF2I Monodelphis domestica ENSMODG00000007022 I 0.000
ENSMPUG00000016156 Mustela putorius furo ENSMPUG00000016156 I 0.000
Gtf2i Mus musculus ENSMUSG00000060261 I 0.000
Myotis_brandtii_GTF2I_10014287 Myotis brandtii Myotis_brandtii_GTF2I_10014287 I 0.000
GTF2I Myotis lucifugus ENSMLUG00000002844 I 0.000
GTF2I Ornithorhynchus anatinus ENSOANG00000012919 I 0.000
GTF2I Oryctolagus cuniculus ENSOCUG00000002063 I 0.000
GTF2I Otolemur garnettii ENSOGAG00000029837 I 0.000
ENSOARG00000011276 Ovis aries ENSOARG00000011276 I 0.000
GTF2I Pan troglodytes ENSPTRG00000019293 I 0.000
ENSPANG00000010876 Papio anubis ENSPANG00000010876 I 0.000
ENSPSIG00000011811 Pelodiscus sinensis ENSPSIG00000011811 I 0.000
Pvit_17518 Pogona vitticeps Pvit_17518 I 0.000
ENSPPYG00000017484 Pongo abelii ENSPPYG00000017484 I 0.000
GTF2I Pteropus vampyrus ENSPVAG00000005365 I 0.000
Gtf2i Rattus norvegicus ENSRNOG00000001479 I 0.000
GTF2I Sus scrofa ENSSSCG00000007721 I 0.000
GTF2I Taeniopygia guttata ENSTGUG00000003714 I 0.000
GTF2I Vicugna pacos ENSVPAG00000008515 I 0.000
gtf2i.S Xenopus laevis XB-GENE-1217444 I 0.000
XP_002932326 Xenopus tropicalis XP_002932326 I 0.000