Lus10017856.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10017856.g T344893_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.929 0.300
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.929 0.300
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.929 0.300
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.924 0.294
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10017856 TCP 54 203
Lus10017856 TCP 230 310

Links

Other TCP family TFs
Other Linum usitatissimum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_7g015010 Medicago truncatula MTR_7g015010 I 0.932
TCP24 Arabidopsis thaliana AT1G30210 D 0.929
Bra032365 Brassica rapa Bra032365 I 0.927
Bo5g062580 Brassica oleracea Bo5g062580 I 0.926
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.926
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.926
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.925
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.925
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.924
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.924
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.924
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.924
OS07G0152000 Oryza sativa OS07G0152000 I 0.924
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.924
OBART07G03380 Oryza barthii OBART07G03380 I 0.923
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.904
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.898
mgf014960m Mimulus guttatus mgf014960m I 0.890
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.873
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.871
Cla020670 Citrullus lanatus Cla020670 I 0.870
mgf025386m Mimulus guttatus mgf025386m I 0.870
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.867
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.866
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.864
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.864
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.863
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.863
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.861
Bo6g107240 Brassica oleracea Bo6g107240 I 0.852
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.852
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.840