Lus10017856.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10017856.g T344893_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP24
M02499_2.00
Arabidopsis thaliana
NNNNRVMCVV

BBGKBYNNNN
PBM
Weirauch et al.(2014)
pTH7337
0.929 0.300
TCP24
M07272_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP24_colamp_a
0.929 0.300
TCP24
M07273_2.00
Arabidopsis thaliana
NNBGGGACCACH

DGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
TCP24_col
0.929 0.300
TCP24
M02506_2.00
Arabidopsis lyrata
NBKKNNMMVN

NBKKNNMMVN
PBM
Weirauch et al.(2014)
pTH9227
0.924 0.294
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10017856 TCP 54 203
Lus10017856 TCP 230 310

Links

Other TCP family TFs
Other Linum usitatissimum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCP24 Arabidopsis thaliana AT1G30210 D 0.929
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.924
Cla020670 Citrullus lanatus Cla020670 I 0.870
mgf014960m Mimulus guttatus mgf014960m I 0.890
mgf025386m Mimulus guttatus mgf025386m I 0.870
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.925
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.867
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.864
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.861
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.852
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.925
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.840
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.864
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.904
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.863
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.866
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.863
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.873
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.924
Bo5g062580 Brassica oleracea Bo5g062580 I 0.926
Bo6g107240 Brassica oleracea Bo6g107240 I 0.852
Bra032365 Brassica rapa Bra032365 I 0.927
MTR_7g015010 Medicago truncatula MTR_7g015010 I 0.932
OBART07G03380 Oryza barthii OBART07G03380 I 0.923
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.871
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.924
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.924
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.924
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.898
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.926
OS07G0152000 Oryza sativa OS07G0152000 I 0.924
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.926