CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Lus10021713.g
(
Linum usitatissimum
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Lus10021713.g
T344895_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.932
0.470
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.856
0.508
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10021713
TCP
111
242
GGKKDRHSKIYTAKGARDRRMRLSLPIARRFFDLQDMLGFDKASKTIEWLFTMSKSAIQDLQIDVCTTCSTSTCSEISTEVVVMSSAKSTRNEKVKMESCIASTKHRSISKEARDKARARARERTAEKKNKK
Links
Other
TCP
family TFs
Other
Linum usitatissimum
TFs
109 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy