Lus10035055.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10035055.g T344902_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.912 0.466
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.835 0.481
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10035055 TCP 103 235

Links

Other TCP family TFs
Other Linum usitatissimum TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK19717.1 Cannabis sativa PK19717.1 D 0.835
PK12240.1 Cannabis sativa PK12240.1 D 0.912
Cla016709 Citrullus lanatus Cla016709 I 0.840
mgf022233m Mimulus guttatus mgf022233m I 0.847
mgf024687m Mimulus guttatus mgf024687m I 0.895
mgf026636m Mimulus guttatus mgf026636m I 0.856
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.886
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.838
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.927
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.885
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.853
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.927
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.927
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.860
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.910
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.863
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.864
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.919
Pm015499 Prunus mume Pm015499 I 0.862
Pm029002 Prunus mume Pm029002 I 0.863
Pm030202 Prunus mume Pm030202 I 0.847
29738.m001041 Ricinus communis 29738.m001041 I 0.867
30167.m000856 Ricinus communis 30167.m000856 I 0.867
30174.m008721 Ricinus communis 30174.m008721 I 0.845
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.889
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.866
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.848
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.853
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.917
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.864
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.830
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.872
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.852
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.901
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.825
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.825
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.846
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.841
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.824
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.836
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.865
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.864
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.917
MDP0000272980 Malus domestica MDP0000272980 I 0.920
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.918
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.843
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.832
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.886
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.909
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.828
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.848
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.881
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.851
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.976
MDP0000173048 Malus domestica MDP0000173048 I 0.892
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.888
Cla007227 Citrullus lanatus Cla007227 I 0.848
AC190734.2_FG003 Zea mays AC190734.2_FG003 I 0.823
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.838
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.889
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.857
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.866
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.852
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.843
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.867
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.824
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.856
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.883
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.859
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.850
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.826
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.867
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.851
BRC2 Arabidopsis thaliana AT1G68800 I 0.917
Bo2g055640 Brassica oleracea Bo2g055640 I 0.826
Bo2g061250 Brassica oleracea Bo2g061250 I 0.836
Bo6g103670 Brassica oleracea Bo6g103670 I 0.824
Bra004097 Brassica rapa Bra004097 I 0.843
Bra034010 Brassica rapa Bra034010 I 0.826
Bra038350 Brassica rapa Bra038350 I 0.836
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.823
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.866
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.917
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.893
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.873
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.842
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.851
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.885
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.863
TCM_011874 Theobroma cacao TCM_011874 I 0.884
TCM_012252 Theobroma cacao TCM_012252 I 0.896
TCM_019518 Theobroma cacao TCM_019518 I 0.843
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.856
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.856
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.856
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.836
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.856
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.868
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.824
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.837
Cla002355 Citrullus lanatus Cla002355 I 0.882
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.878
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.845
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.885
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.842
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.886
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.847
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.863
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.858
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.831
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.865
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.856
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.833
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.850
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.854
Cla019282 Citrullus lanatus Cla019282 N 0.829