Lus10038512.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10038512.g T344906_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.964 0.358
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.964 0.358
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.964 0.358
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.961 0.358
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10038512 TCP 107 272
Lus10038512 TCP 301 421

Links

Other TCP family TFs
Other Linum usitatissimum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra032365 Brassica rapa Bra032365 I 0.964
Bo5g062580 Brassica oleracea Bo5g062580 I 0.964
TCP24 Arabidopsis thaliana AT1G30210 D 0.964
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.961
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.961
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.959
OBART07G03380 Oryza barthii OBART07G03380 I 0.956
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.951
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.947
OS07G0152000 Oryza sativa OS07G0152000 I 0.947
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.947
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.947
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.947
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.942
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.934
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.925
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.917
mgf025386m Mimulus guttatus mgf025386m I 0.914
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.913
Cla020670 Citrullus lanatus Cla020670 I 0.910
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.909
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.906
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.905
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.905
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.905
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.905
mgf014960m Mimulus guttatus mgf014960m I 0.898
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.897
MTR_7g015010 Medicago truncatula MTR_7g015010 I 0.896
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.895
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.889
Bo6g107240 Brassica oleracea Bo6g107240 I 0.876