MDP0000534647 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000534647 T344952_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.910 0.446
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.887 0.420
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.884 0.420
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.884 0.420
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.878 0.411
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.877 0.420
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.877 0.420
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.822 0.366
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000534647 TCP 90 279

Links

Other TCP family TFs
Other Malus domestica TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BRADI3G07987 Brachypodium distachyon BRADI3G07987 N 0.000
Traes_7DL_2B62A6D74 Triticum aestivum Traes_7DL_2B62A6D74 N 0.000
Traes_7AL_ED205638C Triticum aestivum Traes_7AL_ED205638C N 0.000
Sb09g021520 Sorghum bicolor Sb09g021520 N 0.000
ORUFI01G23320 Oryza rufipogon ORUFI01G23320 N 0.000
OPUNC01G20840 Oryza punctata OPUNC01G20840 N 0.000
ONIVA01G23240 Oryza nivara ONIVA01G23240 N 0.000
OLONG_021595 Oryza longistaminata OLONG_021595 N 0.000
OGLUM01G24300 Oryza glumaepatula OGLUM01G24300 N 0.000
OBART01G20650 Oryza barthii OBART01G20650 N 0.000
F775_12196 Aegilops tauschii F775_12196 N 0.000
TRIUR3_11795 Triticum urartu TRIUR3_11795 N 0.000