orange1.1g014360m.g (Citrus sinensis)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 orange1.1g014360m.g T344972_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.955 0.463
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.955 0.463
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.953 0.435
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.953 0.435
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.953 0.435
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.937 0.429
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.893 0.367
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.891 0.361
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.891 0.361
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.874 0.327
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.842 0.320
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.842 0.320
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.842 0.279
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.840 0.299
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g014360m TCP 35 285

Links

Other TCP family TFs
Other Citrus sinensis TFs

415 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL015073 Aedes aegypti AAEL015073 N 0.000
AALB000419 Anopheles albimanus AALB000419 N 0.000
AALB004779 Anopheles albimanus AALB004779 N 0.000
AARA011011 Anopheles arabiensis AARA011011 N 0.000
AATE006365 Anopheles atroparvus AATE006365 N 0.000
ACEP16104 Atta cephalotes ACEP16104 N 0.000
ACEP18439 Atta cephalotes ACEP18439 N 0.000
ACHR005872 Anopheles christyi ACHR005872 N 0.000
ACOM023902 Anopheles coluzzii ACOM023902 N 0.000
ACOM024986 Anopheles coluzzii ACOM024986 N 0.000
ACUA016860 Anopheles culicifacies ACUA016860 N 0.000
ADIR010894 Anopheles dirus ADIR010894 N 0.000
AEPI001839 Anopheles epiroticus AEPI001839 N 0.000
AFAF009935 Anopheles farauti AFAF009935 N 0.000
AFAF009954 Anopheles farauti AFAF009954 N 0.000
AFUN010565 Anopheles funestus AFUN010565 N 0.000
AMAM007431 Anopheles maculatus AMAM007431 N 0.000
AMEC008441 Anopheles melas AMEC008441 N 0.000
AMEM000859 Anopheles merus AMEM000859 N 0.000
AMEM014259 Anopheles merus AMEM014259 N 0.000
AMIN000989 Anopheles minimus AMIN000989 N 0.000
AQUA000259 Anopheles quadriannulatus AQUA000259 N 0.000
AQUA010988 Anopheles quadriannulatus AQUA010988 N 0.000
ASIS022129 Anopheles sinensis ASIS022129 N 0.000
ASTEI05182 Anopheles stephensi ASTEI05182 N 0.000
BAG86626 Xenopus laevis BAG86626 N 0.000
BGIBMGA003172 Bombyx mori BGIBMGA003172 N 0.000
CLEC007100 Cimex lectularius CLEC007100 N 0.000
CPIJ000431 Culex quinquefasciatus CPIJ000431 N 0.000
CpipJ_CPIJ000431 Culex pipiens CpipJ_CPIJ000431 N 0.000
ECPE_0001087501 Echinostoma caproni ECPE_0001087501 N 0.000
ENSETEG00000015428 Echinops telfairi ENSETEG00000015428 I 0.000
ENSGACG00000000841 Gasterosteus aculeatus ENSGACG00000000841 N 0.000
ENSGMOG00000002691 Gadus morhua ENSGMOG00000002691 N 0.000
ENSMEUG00000014480 Macropus eugenii ENSMEUG00000014480 I 0.000
ENSOANG00000002255 Ornithorhynchus anatinus ENSOANG00000002255 N 0.000
ENSPMAG00000004017 Petromyzon marinus ENSPMAG00000004017 N 0.000
ENSPMAG00000008021 Petromyzon marinus ENSPMAG00000008021 N 0.000
ENSSSCG00000006723 Sus scrofa ENSSSCG00000006723 I 0.000
GPUH_0002107201 Gongylonema pulchrum GPUH_0002107201 N 0.000
HelroG171719 Helobdella robusta HelroG171719 N 0.000
ISCW019282 Ixodes scapularis ISCW019282 N 0.000
KGM_02027 Danaus plexippus KGM_02027 N 0.000
LCUP000435 Lucilia cuprina LCUP000435 N 0.000
LLOJ003747 Lutzomyia longipalpis LLOJ003747 N 0.000
MESCA003495 Megaselia scalaris MESCA003495 N 0.000
nLs.2.1.2.g07026 Litomosoides sigmodontis nLs.2.1.2.g07026 N 0.000
Ocbimv22015178m.g Octopus bimaculoides Ocbimv22015178m.g N 0.000
OFLC_0001538801 Onchocerca flexuosa OFLC_0001538801 N 0.000
Ogr11254 Ophisaurus gracilis Ogr11254 N 0.000
PHUM147980 Pediculus humanus PHUM147980 N 0.000
RPRC001515 Rhodnius prolixus RPRC001515 N 0.000
SPU_018391 Strongylocentrotus purpuratus SPU_018391 N 0.000
Tbx15 Mus musculus ENSMUSG00000027868 I 0.000
Tbx15 Dipodomys ordii ENSDORG00000005620 N 0.000
TBX2 Homo sapiens ENSG00000121068 D 0.000
Tbx5 Mus musculus ENSMUSG00000018263 D 0.000
TC013511 Tribolium castaneum TC013511 N 0.000
TCLT_0000604501 Thelazia callipaeda TCLT_0000604501 N 0.000
WUBG_09879 Wuchereria bancrofti WUBG_09879 N 0.000