orange1.1g047495m.g (Citrus sinensis)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 orange1.1g047495m.g T344983_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP24
M02499_2.00
Arabidopsis thaliana
NNNNRVMCVV

BBGKBYNNNN
PBM
Weirauch et al.(2014)
pTH7337
0.924 0.365
TCP24
M07272_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP24_colamp_a
0.924 0.365
TCP24
M07273_2.00
Arabidopsis thaliana
NNBGGGACCACH

DGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
TCP24_col
0.924 0.365
TCP24
M02506_2.00
Arabidopsis lyrata
NBKKNNMMVN

NBKKNNMMVN
PBM
Weirauch et al.(2014)
pTH9227
0.917 0.357
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g047495m TCP 20 97
orange1.1g047495m TCP 83 121

Links

Other TCP family TFs
Other Citrus sinensis TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.983
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.982
mgf025386m Mimulus guttatus mgf025386m I 0.960
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.959
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.959
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.957
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.955
Cla020670 Citrullus lanatus Cla020670 I 0.953
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.950
Bo6g107240 Brassica oleracea Bo6g107240 I 0.950
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.946
TCP24 Arabidopsis thaliana AT1G30210 D 0.924
Bo5g062580 Brassica oleracea Bo5g062580 I 0.923
Bra032365 Brassica rapa Bra032365 I 0.922
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.922
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.920
OBART07G03380 Oryza barthii OBART07G03380 I 0.918
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.918
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.917
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.908
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.905
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.901
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.900
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.898
OS07G0152000 Oryza sativa OS07G0152000 I 0.896
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.896
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.895
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.895
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.895
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.864
mgf014960m Mimulus guttatus mgf014960m I 0.825