Pavir.Ba01820 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.Ba01820 T344989_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.841 0.551
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM

KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.836 0.603
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01820.1.p TCP 99 217

Links

Other TCP family TFs
Other Panicum virgatum TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30167.m000856 Ricinus communis 30167.m000856 I 0.846
30174.m008721 Ricinus communis 30174.m008721 I 0.849
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.848
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.836
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.920
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.955
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.833
Bra004212 Brassica rapa Bra004212 I 0.828
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.827
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.948
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.938
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.833
BRC2 Arabidopsis thaliana AT1G68800 I 0.833
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.833
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.833
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.848
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.848
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.837
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.842
Cla016709 Citrullus lanatus Cla016709 I 0.840
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.839
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.832
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.876
F775_01923 Aegilops tauschii F775_01923 I 0.921
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.844
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.827
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.831
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.827
GLYMA12G35720 Glycine max GLYMA12G35720 I 0.826
GLYMA13G34690 Glycine max GLYMA13G34690 I 0.825
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.837
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.931
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.920
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.947
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.927
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.953
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.948
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.948
GRMZM2G414114 Zea mays GRMZM2G414114 N 0.826
GRMZM2G458087 Zea mays GRMZM2G458087 N 0.828
GSMUA_Achr10G01020_001 Musa acuminata GSMUA_Achr10G01020_001 I 0.823
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.839
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.852
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.836
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.930
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.962
Lus10032465.g Linum usitatissimum Lus10032465.g N 0.825
MDP0000224810 Malus domestica MDP0000224810 N 0.839
mgf022233m Mimulus guttatus mgf022233m I 0.850
mgf026636m Mimulus guttatus mgf026636m I 0.835
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.945
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.937
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.836
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.829
OBART03G31290 Oryza barthii OBART03G31290 I 0.836
OBART08G15630 Oryza barthii OBART08G15630 N 0.907
OBART09G10040 Oryza barthii OBART09G10040 I 0.956
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.836
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.924
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.956
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.836
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.932
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.948
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.836
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.927
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.955
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.831
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.931
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.961
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.842
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.836
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.931
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.836
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.920
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.955
OS08G0432300 Oryza sativa OS08G0432300 I 0.920
OS09G0410500 Oryza sativa OS09G0410500 I 0.956
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.970
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.919
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.923
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.836
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.840
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.847
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.867
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.824
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.845
PK12240.1 Cannabis sativa PK12240.1 D 0.841
Pm015499 Prunus mume Pm015499 I 0.829
Pm030202 Prunus mume Pm030202 I 0.829
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.858
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.839
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.829
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.829
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.843
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.854
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.842
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.842
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.842
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.827
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.962
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.944
Si015230m.g Setaria italica Si015230m.g I 0.941
Si033183m.g Setaria italica Si033183m.g I 0.974
Si038692m.g Setaria italica Si038692m.g I 0.834
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.827
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.849
TB1 Oryza sativa OS03G0706500 D 0.836
TCM_019518 Theobroma cacao TCM_019518 I 0.825
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.827
Traes_2AS_1A307CE26 Triticum aestivum Traes_2AS_1A307CE26 N 0.845
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.836
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.836
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.836
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.944
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.932
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.946
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.836