Pavir.Ea02793 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.Ea02793 T344996_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.950 0.819
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.938 0.792
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.935 0.792
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.926 0.681
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.902 0.625
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.902 0.625
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.892 0.722
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.892 0.722
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.884 0.681
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.884 0.681
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.875 0.611
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.875 0.611
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.875 0.611
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.868 0.583
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.864 0.583
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.845 0.583
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea02793.1.p TCP 46 135
Pavir.Ea02793.2.p TCP 46 135

Links

Other TCP family TFs
Other Panicum virgatum TFs

426 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29709.m001180 Ricinus communis 29709.m001180 N 0.000
Aquca_010_00154 Aquilegia coerulea Aquca_010_00154 N 0.000
AT2G44730 Arabidopsis thaliana AT2G44730 N 0.000
Bo3g037360 Brassica oleracea Bo3g037360 N 0.000
Bo4g023990 Brassica oleracea Bo4g023990 N 0.000
Bostr.25993s0300 Boechera stricta Bostr.25993s0300 N 0.000
Bra000360 Brassica rapa Bra000360 N 0.000
Cagra.0239s0022 Capsella grandiflora Cagra.0239s0022 N 0.000
Carubv10025047m.g Capsella rubella Carubv10025047m.g N 0.000
cassava12982.valid.m1 Manihot esculenta cassava12982.valid.m1 N 0.000
Ca_06067 Cicer arietinum Ca_06067 N 0.000
Ca_06795 Cicer arietinum Ca_06795 N 0.000
chr4.CM0739.40.nd Lotus japonicus chr4.CM0739.40.nd N 0.000
Ciclev10020863m.g Citrus clementina Ciclev10020863m.g N 0.000
Cla021714 Citrullus lanatus Cla021714 N 0.000
Cucsa.256710 Cucumis sativus Cucsa.256710 N 0.000
evm.TU.supercontig_41.83 Carica papaya evm.TU.supercontig_41.83 N 0.000
fgenesh2_kg.4__2662__AT2G44730.1 Arabidopsis lyrata fgenesh2_kg.4__2662__AT2G44730.1 N 0.000
gene05318-v1.0-hybrid Fragaria vesca gene05318-v1.0-hybrid N 0.000
GLYMA08G05630 Glycine max GLYMA08G05630 N 0.000
GLYMA09G38050 Glycine max GLYMA09G38050 N 0.000
GLYMA18G48343 Glycine max GLYMA18G48343 N 0.000
GLYMA19G29640 Glycine max GLYMA19G29640 N 0.000
Gorai.004G167100 Gossypium raimondii Gorai.004G167100 N 0.000
GRMZM2G379179 Zea mays GRMZM2G379179 N 0.000
GRMZM5G850092 Zea mays GRMZM5G850092 N 0.000
MDP0000557282 Malus domestica MDP0000557282 N 0.000
mgf005560m Mimulus guttatus mgf005560m N 0.000
MTR_4g117990 Medicago truncatula MTR_4g117990 N 0.000
MTR_7g081190 Medicago truncatula MTR_7g081190 N 0.000
PK17306.1 Cannabis sativa PK17306.1 N 0.000
POPTR_0002s14030 Populus trichocarpa POPTR_0002s14030 N 0.000
POPTR_0014s05010 Populus trichocarpa POPTR_0014s05010 N 0.000
SapurV1A.0033s0070 Salix purpurea SapurV1A.0033s0070 N 0.000
Solyc01g088820.2 Solanum lycopersicum Solyc01g088820.2 N 0.000
TCM_005773 Theobroma cacao TCM_005773 N 0.000
Thhalv10001488m.g Eutrema salsugineum Thhalv10001488m.g N 0.000
VIT_15s0021g01220 Vitis vinifera VIT_15s0021g01220 N 0.000