Pavir.Fb01590 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.Fb01590 T345002_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.857 0.485
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01590.1.p TCP 81 194

Links

Other TCP family TFs
Other Panicum virgatum TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.958
Si015230m.g Setaria italica Si015230m.g I 0.958
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.956
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.955
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.949
F775_01923 Aegilops tauschii F775_01923 I 0.945
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.942
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.941
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.931
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.931
OBART09G10040 Oryza barthii OBART09G10040 I 0.931
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.931
OS09G0410500 Oryza sativa OS09G0410500 I 0.931
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.931
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.930
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.930
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.928
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.924
Si033183m.g Setaria italica Si033183m.g I 0.923
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.923
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.921
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.921
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.920
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.920
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.918
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.916
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.916
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.913
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.912
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.912
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.908
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.906
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.903
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.901
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.898
GRMZM2G414114 Zea mays GRMZM2G414114 N 0.897
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.897
GRMZM2G458087 Zea mays GRMZM2G458087 N 0.894
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.892
OS08G0432300 Oryza sativa OS08G0432300 I 0.892
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.892
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.892
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.874
30174.m008721 Ricinus communis 30174.m008721 I 0.873
OBART08G15630 Oryza barthii OBART08G15630 N 0.873
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.869
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.861
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.860
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.860
TB1 Oryza sativa OS03G0706500 D 0.857
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.857
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.857
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.857
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.857
Bo3g071560 Brassica oleracea Bo3g071560 I 0.855
Traes_2DS_4C8E5F416 Triticum aestivum Traes_2DS_4C8E5F416 N 0.854
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.852
GRMZM2G359599 Zea mays GRMZM2G359599 N 0.851
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.849
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.848
AC234521.1_FG006 Zea mays AC234521.1_FG006 N 0.848
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.848
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.846
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.843
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.843
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.843
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.843
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.843
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.843
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.841
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.841
OBART03G31290 Oryza barthii OBART03G31290 I 0.841
Pm030202 Prunus mume Pm030202 I 0.840
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.840
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.840
GRMZM2G170232 Zea mays GRMZM2G170232 N 0.839
TCM_012252 Theobroma cacao TCM_012252 I 0.839
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.838
TCM_019518 Theobroma cacao TCM_019518 I 0.838
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.837
MDP0000224810 Malus domestica MDP0000224810 N 0.837
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.834
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.833
Bra001710 Brassica rapa Bra001710 I 0.832
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.832
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.829
Pm015499 Prunus mume Pm015499 I 0.829
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.828
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.826
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.825
Si038692m.g Setaria italica Si038692m.g I 0.825
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.825
GRMZM2G135461 Zea mays GRMZM2G135461 N 0.825
BRC1 Arabidopsis thaliana AT3G18550 I 0.824
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.824
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.824
Bo5g117410 Brassica oleracea Bo5g117410 N 0.823
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.822