Pavir.Ia00838 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.Ia00838 T345007_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.949 0.695
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia00838.1.p TCP 114 268

Links

Other TCP family TFs
Other Panicum virgatum TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ib04362 Panicum virgatum Pavir.Ib04362 I 0.977
Si038692m.g Setaria italica Si038692m.g I 0.974
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.961
OBART03G31290 Oryza barthii OBART03G31290 I 0.961
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.959
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.952
TB1 Oryza sativa OS03G0706500 D 0.949
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.949
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.949
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.949
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.949
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.945
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.944
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.939
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.938
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.932
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.932
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.932
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.932
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.931
AC190734.2_FG003 Zea mays AC190734.2_FG003 I 0.916
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.864
OB03G38320 Oryza brachyantha OB03G38320 I 0.863
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.862
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.850
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.849
OBART09G10040 Oryza barthii OBART09G10040 I 0.849
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.849
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.849
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.849
OS09G0410500 Oryza sativa OS09G0410500 I 0.849
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.848
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.847
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.847
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.846
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.845
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.845
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.844
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.843
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.842
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.842
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.841
MDP0000224810 Malus domestica MDP0000224810 N 0.841
Si033183m.g Setaria italica Si033183m.g I 0.840
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.840
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.839
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.838
Si015230m.g Setaria italica Si015230m.g I 0.838
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.838
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.836
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.836
Bo5g117410 Brassica oleracea Bo5g117410 N 0.834
Pm030202 Prunus mume Pm030202 I 0.833
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.833
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.833
mgf026636m Mimulus guttatus mgf026636m I 0.832
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.832
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.832
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.831
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.831
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.830
Bo3g071560 Brassica oleracea Bo3g071560 I 0.830
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.829
BRC1 Arabidopsis thaliana AT3G18550 I 0.829
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.829
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.827
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.826
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.826
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.826
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.825
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.825
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.825
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.825
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.824
F775_01923 Aegilops tauschii F775_01923 I 0.824
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.824
OS08G0432300 Oryza sativa OS08G0432300 I 0.824
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.824
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.824
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.823
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.823
29738.m001041 Ricinus communis 29738.m001041 I 0.822