CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.J36496
(
Panicum virgatum
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Pavir.J36496
T345026_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.890
0.767
PCF2
M11399_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.879
0.791
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.873
0.721
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.873
0.721
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.873
0.721
TCP20
M11397_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.873
0.721
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.866
0.721
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC
GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.863
0.698
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.841
0.744
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.838
0.744
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.838
0.744
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.838
0.744
TCP15
M11394_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.838
0.744
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.837
0.721
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.837
0.721
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC
GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.827
0.721
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.826
0.721
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.826
0.721
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.826
0.721
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC
GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.824
0.698
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.824
0.698
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.824
0.721
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.823
0.721
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.823
0.721
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.823
0.721
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.823
0.721
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J36496.1.p
TCP
73
115
PRYRDRHTKVEGRGRRIRLAAPCAARVARLTRELQHKSDGETP
Links
Other
TCP
family TFs
Other
Panicum virgatum
TFs
418 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy