Thhalv10008175m.g (Eutrema salsugineum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Thhalv10008175m.g T345081_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP24
M02499_2.00
Arabidopsis thaliana
NNNNRVMCVV

BBGKBYNNNN
PBM
Weirauch et al.(2014)
pTH7337
0.962 0.795
TCP24
M07272_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP24_colamp_a
0.962 0.795
TCP24
M07273_2.00
Arabidopsis thaliana
NNBGGGACCACH

DGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
TCP24_col
0.962 0.795
TCP24
M02506_2.00
Arabidopsis lyrata
NBKKNNMMVN

NBKKNNMMVN
PBM
Weirauch et al.(2014)
pTH9227
0.961 0.804
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10008175m TCP 50 132
Thhalv10008175m TCP 120 154

Links

Other TCP family TFs
Other Eutrema salsugineum TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCP24 Arabidopsis thaliana AT1G30210 D 0.962
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.961
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.902
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.921
Cla020670 Citrullus lanatus Cla020670 I 0.910
mgf014960m Mimulus guttatus mgf014960m I 0.890
mgf025386m Mimulus guttatus mgf025386m I 0.911
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.962
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.904
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.901
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.888
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.911
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.904
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.951
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.876
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.901
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.892
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.925
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.918
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.942
Bo5g062580 Brassica oleracea Bo5g062580 I 0.963
Bo6g107240 Brassica oleracea Bo6g107240 I 0.879
Bra032365 Brassica rapa Bra032365 I 0.974
MTR_7g015010 Medicago truncatula MTR_7g015010 I 0.872
OBART07G03380 Oryza barthii OBART07G03380 I 0.952
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.914
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.941
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.941
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.941
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.932
OS07G0152000 Oryza sativa OS07G0152000 I 0.942
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.955
SELMODRAFT_441321 Selaginella moellendorffii SELMODRAFT_441321 N 0.826
Bo9g052090 Brassica oleracea Bo9g052090 N 0.850
GLYMA16G05840 Glycine max GLYMA16G05840 N 0.845
SELMODRAFT_429489 Selaginella moellendorffii SELMODRAFT_429489 N 0.826