Thhalv10008175m.g (Eutrema salsugineum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Thhalv10008175m.g T345081_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP24
M02499_2.00
Arabidopsis thaliana
NNNNRVMCVV

BBGKBYNNNN
PBM
Weirauch et al.(2014)
pTH7337
0.962 0.795
TCP24
M07272_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP24_colamp_a
0.962 0.795
TCP24
M07273_2.00
Arabidopsis thaliana
NNBGGGACCACH

DGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
TCP24_col
0.962 0.795
TCP24
M02506_2.00
Arabidopsis lyrata
NBKKNNMMVN

NBKKNNMMVN
PBM
Weirauch et al.(2014)
pTH9227
0.961 0.804
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10008175m TCP 50 132
Thhalv10008175m TCP 120 154

Links

Other TCP family TFs
Other Eutrema salsugineum TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGOS_AGR117C Ashbya gossypii AGOS_AGR117C I 0.000
CAGL0L11880g Candida glabrata CAGL0L11880g I 0.000
Ecym_3520 Eremothecium cymbalariae Ecym_3520 I 0.000
KAFR_0A02380 Kazachstania africana KAFR_0A02380 I 0.000
KAFR_0B02550 Kazachstania africana KAFR_0B02550 I 0.000
KNAG_0H03010 Kazachstania naganishii KNAG_0H03010 I 0.000
KNAG_0G01870 Kazachstania naganishii KNAG_0G01870 I 0.000
KLLA0_C17710g Kluyveromyces lactis KLLA0_C17710g I 0.000
KLTH0G14454g Kluyveromyces thermotolerans KLTH0G14454g I 0.000
Kwal_23453 Kluyveromyces waltii Kwal_23453 I 0.000
LALA0_S07e07030g Lachancea lanzarotensis LALA0_S07e07030g I 0.000
KLTH0G14454g Lachancea thermotolerans KLTH0G14454g I 0.000
NCAS_0B04840 Naumovozyma castellii NCAS_0B04840 I 0.000
NDAI_0B02250 Naumovozyma dairenensis NDAI_0B02250 I 0.000
SU7_0636 Saccharomyces arboricola SU7_0636 I 0.000
SU7_0955 Saccharomyces arboricola SU7_0955 I 0.000
4347_Multiple Saccharomyces bayanus 4347_Multiple I 0.000
7085_YER169W Saccharomyces bayanus 7085_YER169W I 0.000
Scas_Contig681.19 Saccharomyces castellii Scas_Contig681.19 I 0.000
GIS1 Saccharomyces cerevisiae YDR096W D 0.000
RPH1 Saccharomyces cerevisiae YER169W D 0.000
SKUD_141701 Saccharomyces kudriavzevii SKUD_141701 I 0.000
6173_YER169W Saccharomyces mikatae 6173_YER169W I 0.000
3770_YDR096W Saccharomyces mikatae 3770_YDR096W I 0.000
6757_YER169W Saccharomyces paradoxus 6757_YER169W I 0.000
4088_Multiple Saccharomyces paradoxus 4088_Multiple I 0.000
AACERI_AaceriAGR117C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGR117C I 0.000
TBLA_0F03830 Tetrapisispora blattae TBLA_0F03830 I 0.000
TBLA_0E04220 Tetrapisispora blattae TBLA_0E04220 I 0.000
TPHA_0A01940 Tetrapisispora phaffii TPHA_0A01940 I 0.000
TDEL_0A01300 Torulaspora delbrueckii TDEL_0A01300 I 0.000
Kpol_1032p52 Vanderwaltozyma polyspora Kpol_1032p52 I 0.000
ZBAI_06407 Zygosaccharomyces bailii ZBAI_06407 I 0.000
ZBAI_04846 Zygosaccharomyces bailii ZBAI_04846 I 0.000
ZYRO0B11770g Zygosaccharomyces rouxii ZYRO0B11770g I 0.000