Thhalv10018773m.g (Eutrema salsugineum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Thhalv10018773m.g T345090_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP24
M02499_2.00
Arabidopsis thaliana
NNNNRVMCVV

BBGKBYNNNN
PBM
Weirauch et al.(2014)
pTH7337
0.917 0.346
TCP24
M07272_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP24_colamp_a
0.917 0.346
TCP24
M07273_2.00
Arabidopsis thaliana
NNBGGGACCACH

DGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
TCP24_col
0.917 0.346
TCP24
M02506_2.00
Arabidopsis lyrata
NBKKNNMMVN

NBKKNNMMVN
PBM
Weirauch et al.(2014)
pTH9227
0.915 0.353
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10018773m TCP 106 179
Thhalv10018773m TCP 174 233

Links

Other TCP family TFs
Other Eutrema salsugineum TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCP24 Arabidopsis thaliana AT1G30210 D 0.917
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.915
Cla020670 Citrullus lanatus Cla020670 I 0.954
mgf014960m Mimulus guttatus mgf014960m I 0.832
mgf025386m Mimulus guttatus mgf025386m I 0.961
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.917
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.956
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.957
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.956
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.940
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.863
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.889
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.921
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.957
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.892
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.959
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.945
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.905
Bo5g062580 Brassica oleracea Bo5g062580 I 0.917
Bo6g107240 Brassica oleracea Bo6g107240 I 0.976
Bra032365 Brassica rapa Bra032365 I 0.915
OBART07G03380 Oryza barthii OBART07G03380 I 0.917
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.904
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.904
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.904
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.904
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.914
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.917
OS07G0152000 Oryza sativa OS07G0152000 I 0.905
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.948
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I 0.898