PK10344.1 (Cannabis sativa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 PK10344.1 T345102_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.941 0.621
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.940 0.632
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.917 0.632
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.917 0.632
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.911 0.526
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.897 0.568
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.897 0.568
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.886 0.516
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.883 0.516
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.883 0.516
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.881 0.516
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.881 0.516
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.881 0.516
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.880 0.526
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.877 0.526
For this family, TFs with SR scores > 0.822 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01313_2.00 TCP 52 182

DNA Binding Domains

Protein ID Domain From To Sequence
PK10344.1 TCP 104 234

Links

Other TCP family TFs
Other Cannabis sativa TFs

Invalid Input OrderBy

430 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action