CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK12240.1
(
Cannabis sativa
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
PK12240.1
T345103_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.878
0.484
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.870
0.444
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.842
0.484
For this family, TFs with SR scores >
0.822
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01314_2.00
TCP
4
129
AGKKDRHSKISTAQGLRDRRMRLSLQIARKFFDLQDMLGFDKASKTIDWLFNKSKTAITELKDSMITSNNNDDNDHDEDDDDDLVVVMKNNEAAGRDNKKMKNMNVVRKLVAKESRDMARARARER
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK12240.1
TCP
4
129
AGKKDRHSKISTAQGLRDRRMRLSLQIARKFFDLQDMLGFDKASKTIDWLFNKSKTAITELKDSMITSNNNDDNDHDEDDDDDLVVVMKNNEAAGRDNKKMKNMNVVRKLVAKESRDMARARARER
Links
Other
TCP
family TFs
Other
Cannabis sativa
TFs
140 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy