PK19717.1 (Cannabis sativa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 PK19717.1 T345112_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.896 0.437
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.878 0.404
For this family, TFs with SR scores > 0.822 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01318_2.00 TCP 52 202

DNA Binding Domains

Protein ID Domain From To Sequence
PK19717.1 TCP 154 304

Links

Other TCP family TFs
Other Cannabis sativa TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.860
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.845
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.872
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.900
BRC2 Arabidopsis thaliana AT1G68800 I 0.873
TCP1 Arabidopsis thaliana AT1G67260 D 0.896
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.865
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.872
Bo6g103670 Brassica oleracea Bo6g103670 I 0.881
Bo2g055640 Brassica oleracea Bo2g055640 I 0.837
Bo2g061250 Brassica oleracea Bo2g061250 I 0.860
Bo6g099040 Brassica oleracea Bo6g099040 I 0.859
Bra034010 Brassica rapa Bra034010 I 0.847
Bra038350 Brassica rapa Bra038350 I 0.860
Bra004212 Brassica rapa Bra004212 I 0.874
Bra004097 Brassica rapa Bra004097 I 0.864
PK12240.1 Cannabis sativa PK12240.1 D 0.878
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.872
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.880
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.870
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.872
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.865
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.905
Cla007227 Citrullus lanatus Cla007227 I 0.900
Cla016709 Citrullus lanatus Cla016709 I 0.905
Cla002355 Citrullus lanatus Cla002355 I 0.860
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.873
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.873
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.911
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.894
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.868
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.864
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.878
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.837
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.874
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.868
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.873
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.876
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.876
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.842
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.886
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.860
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.876
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.855
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.885
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.835
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.856
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.873
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.888
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.872
MDP0000272980 Malus domestica MDP0000272980 I 0.859
MDP0000173048 Malus domestica MDP0000173048 I 0.884
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.860
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.847
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.860
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.899
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.857
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.866
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.869
mgf022233m Mimulus guttatus mgf022233m I 0.827
mgf019480m Mimulus guttatus mgf019480m I 0.843
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.867
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.865
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.846
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.875
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.854
Pm029002 Prunus mume Pm029002 I 0.863
Pm015499 Prunus mume Pm015499 I 0.866
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.863
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.862
30167.m000856 Ricinus communis 30167.m000856 I 0.900
29738.m001041 Ricinus communis 29738.m001041 I 0.867
30174.m008721 Ricinus communis 30174.m008721 I 0.830
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.830
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.830
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.886
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.850
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.859
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.835
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.860
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.881
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.853
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.887
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.825
TCM_011874 Theobroma cacao TCM_011874 I 0.869
TCM_019518 Theobroma cacao TCM_019518 I 0.887
TCM_012252 Theobroma cacao TCM_012252 I 0.823
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.852
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.846
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.824