chr3.CM0282.560.nc (Lotus japonicus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 chr3.CM0282.560.nc T345118_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.945 0.254
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.945 0.254
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.945 0.254
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.941 0.243
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM0282.560.nc TCP 48 199
chr3.CM0282.560.nc TCP 223 341

Links

Other TCP family TFs
Other Lotus japonicus TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA07G01330 Oryza nivara ONIVA07G01330 I 0.947
OS07G0152000 Oryza sativa OS07G0152000 I 0.947
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I 0.947
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I 0.947
BGIOSGA025162 Oryza indica BGIOSGA025162 I 0.947
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I 0.946
TCP24 Arabidopsis thaliana AT1G30210 D 0.945
Bra032365 Brassica rapa Bra032365 I 0.944
OBART07G03380 Oryza barthii OBART07G03380 I 0.943
Lus10038512.g Linum usitatissimum Lus10038512.g I 0.942
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I 0.941
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D 0.941
Bo5g062580 Brassica oleracea Bo5g062580 I 0.940
mgf014960m Mimulus guttatus mgf014960m I 0.934
Lus10017856.g Linum usitatissimum Lus10017856.g I 0.926
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.925
Cla020670 Citrullus lanatus Cla020670 I 0.908
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I 0.906
MTR_7g015010 Medicago truncatula MTR_7g015010 I 0.905
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.905
mgf025386m Mimulus guttatus mgf025386m I 0.905
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I 0.901
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I 0.900
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I 0.900
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I 0.900
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I 0.898
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I 0.898
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.892
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.889
Bo6g107240 Brassica oleracea Bo6g107240 I 0.888
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I 0.886
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I 0.879