chr4.CM0500.330.nd (Lotus japonicus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 chr4.CM0500.330.nd T345122_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.945 0.579
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.944 0.553
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.929 0.491
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.900 0.491
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.900 0.491
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.894 0.474
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.894 0.474
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.875 0.404
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.860 0.395
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.854 0.377
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.850 0.386
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.847 0.368
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.843 0.377
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.843 0.377
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.843 0.377
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.843 0.360
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0500.330.nd TCP 88 235

Links

Other TCP family TFs
Other Lotus japonicus TFs

399 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nhr-34 Caenorhabditis elegans WBGene00003627 D 0.000
HCOI00094500 Haemonchus contortus HCOI00094500 I 0.000
L889_g25097 Steinernema feltiae L889_g25097 I 0.000
L889_g2977 Steinernema feltiae L889_g2977 I 0.000
L889_g31970 Steinernema feltiae L889_g31970 I 0.000
L889_g366 Steinernema feltiae L889_g366 I 0.000
L892_g17146 Steinernema scapterisci L892_g17146 I 0.000
L892_g17832 Steinernema scapterisci L892_g17832 I 0.000
L892_g186 Steinernema scapterisci L892_g186 I 0.000
L892_g23093 Steinernema scapterisci L892_g23093 I 0.000
L892_g3438 Steinernema scapterisci L892_g3438 I 0.000
L893_g263 Steinernema glaseri L893_g263 I 0.000
L893_g33656 Steinernema glaseri L893_g33656 I 0.000
L893_g5404 Steinernema glaseri L893_g5404 I 0.000
L893_g6023 Steinernema glaseri L893_g6023 I 0.000
L893_g6565 Steinernema glaseri L893_g6565 I 0.000
L889_g16305 Steinernema feltiae L889_g16305 I 0.000
L889_g15424 Steinernema feltiae L889_g15424 I 0.000
HCOI01442000 Haemonchus contortus HCOI01442000 I 0.000
HCOI01927800 Haemonchus contortus HCOI01927800 I 0.000
HCOI01945300 Haemonchus contortus HCOI01945300 I 0.000
HCOI02126500 Haemonchus contortus HCOI02126500 I 0.000
HPBE_0001033901 Heligmosomoides bakeri HPBE_0001033901 I 0.000
HPBE_0001438801 Heligmosomoides bakeri HPBE_0001438801 I 0.000
HPBE_0001524301 Heligmosomoides bakeri HPBE_0001524301 I 0.000
HPLM_0000308401 Haemonchus placei HPLM_0000308401 I 0.000
HPLM_0001358001 Haemonchus placei HPLM_0001358001 I 0.000
L596_g10816 Steinernema carpocapsae L596_g10816 I 0.000
L596_g25910 Steinernema carpocapsae L596_g25910 I 0.000
L596_g26401 Steinernema carpocapsae L596_g26401 I 0.000
L596_g7829 Steinernema carpocapsae L596_g7829 I 0.000
L596_g9277 Steinernema carpocapsae L596_g9277 I 0.000
L596_g9904 Steinernema carpocapsae L596_g9904 I 0.000
L898_g11608 Steinernema monticolum L898_g11608 I 0.000
L898_g18440 Steinernema monticolum L898_g18440 I 0.000
L898_g32368 Steinernema monticolum L898_g32368 I 0.000
scaffold277-EXSNAP2012.12 Pristionchus exspectatus scaffold277-EXSNAP2012.12 I 0.000
scaffold488-EXSNAP2012.17 Pristionchus exspectatus scaffold488-EXSNAP2012.17 I 0.000
scaffold52-EXSNAP2012.30 Pristionchus exspectatus scaffold52-EXSNAP2012.30 I 0.000
SMUV_0000230901 Syphacia muris SMUV_0000230901 I 0.000
SMUV_0000835401 Syphacia muris SMUV_0000835401 I 0.000
SMUV_0001036101 Syphacia muris SMUV_0001036101 I 0.000
SPAL_0000533900 Strongyloides papillosus SPAL_0000533900 I 0.000
SPAL_0001056000 Strongyloides papillosus SPAL_0001056000 I 0.000
SSTP_0000230100 Strongyloides stercoralis SSTP_0000230100 I 0.000
SSTP_0000860300 Strongyloides stercoralis SSTP_0000860300 I 0.000
SVE_0105800 Strongyloides venezuelensis SVE_0105800 I 0.000
SVE_1768400 Strongyloides venezuelensis SVE_1768400 I 0.000
SVUK_0000195901 Strongylus vulgaris SVUK_0000195901 I 0.000
TCLT_0000342401 Thelazia callipaeda TCLT_0000342401 I 0.000
TCNE_0000582701 Toxocara canis TCNE_0000582701 I 0.000
RSKR_0001175400 Rhabditophanes kr3021 RSKR_0001175400 I 0.000
RSKR_0000178700 Rhabditophanes kr3021 RSKR_0000178700 I 0.000
L898_g5338 Steinernema monticolum L898_g5338 I 0.000
L898_g9613 Steinernema monticolum L898_g9613 I 0.000
scaffold1338-EXSNAP2012.3 Pristionchus exspectatus scaffold1338-EXSNAP2012.3 I 0.000
MhA1_Contig691.frz3.gene13 Meloidogyne hapla MhA1_Contig691.frz3.gene13 I 0.000
nAv.1.0.1.g08447 Acanthocheilonema viteae nAv.1.0.1.g08447 I 0.000
NBR_0000015501 Nippostrongylus brasiliensis NBR_0000015501 I 0.000
nDi.2.2.2.g03974 Dirofilaria immitis nDi.2.2.2.g03974 I 0.000
NECAME_02375 Necator americanus NECAME_02375 I 0.000
nLs.2.1.2.g04526 Litomosoides sigmodontis nLs.2.1.2.g04526 I 0.000
nOo.2.0.1.g02628 Onchocerca ochengi nOo.2.0.1.g02628 I 0.000
OESDEN_00859 Oesophagostomum dentatum OESDEN_00859 I 0.000
OFLC_0000076301 Onchocerca flexuosa OFLC_0000076301 I 0.000
PTRK_0000748600 Parastrongyloides trichosuri PTRK_0000748600 I 0.000
PTRK_0001236400 Parastrongyloides trichosuri PTRK_0001236400 I 0.000
PTRK_0001591500 Parastrongyloides trichosuri PTRK_0001591500 I 0.000
TELCIR_07460 Teladorsagia circumcincta TELCIR_07460 I 0.000
Hba_17946 Heterorhabditis bacteriophora Hba_17946 I 0.000
Bm5457 Brugia malayi Bm5457 I 0.000
CJA14035 Caenorhabditis japonica CJA14035 I 0.000
CJA14248 Caenorhabditis japonica CJA14248 I 0.000
CJA14611 Caenorhabditis japonica CJA14611 I 0.000
CJA19445 Caenorhabditis japonica CJA19445 I 0.000
CJA39530 Caenorhabditis japonica CJA39530 I 0.000
CRE07033 Caenorhabditis remanei CRE07033 I 0.000
CRE07035 Caenorhabditis remanei CRE07035 I 0.000
CRE08264 Caenorhabditis remanei CRE08264 I 0.000
CRE09416 Caenorhabditis remanei CRE09416 I 0.000
CRE10779 Caenorhabditis remanei CRE10779 I 0.000
CRE21925 Caenorhabditis remanei CRE21925 I 0.000
CRE22212 Caenorhabditis remanei CRE22212 I 0.000
CRE24933 Caenorhabditis remanei CRE24933 I 0.000
CRE26423 Caenorhabditis remanei CRE26423 I 0.000
LOAG_07549 Loa loa LOAG_07549 I 0.000
CJA06107 Caenorhabditis japonica CJA06107 I 0.000
CJA02727 Caenorhabditis japonica CJA02727 I 0.000
CBG03466 Caenorhabditis briggsae CBG03466 I 0.000
CBG03860 Caenorhabditis briggsae CBG03860 I 0.000
CBG04240 Caenorhabditis briggsae CBG04240 I 0.000
CBG13142 Caenorhabditis briggsae CBG13142 I 0.000
CBG14996 Caenorhabditis briggsae CBG14996 I 0.000
CBG14997 Caenorhabditis briggsae CBG14997 I 0.000
CBG22587 Caenorhabditis briggsae CBG22587 I 0.000
CBG22776 Caenorhabditis briggsae CBG22776 I 0.000
CBN00088 Caenorhabditis brenneri CBN00088 I 0.000
CBN04415 Caenorhabditis brenneri CBN04415 I 0.000
CBN05776 Caenorhabditis brenneri CBN05776 I 0.000
CBN08474 Caenorhabditis brenneri CBN08474 I 0.000
CBN21958 Caenorhabditis brenneri CBN21958 I 0.000
CBN28641 Caenorhabditis brenneri CBN28641 I 0.000
CBN32300 Caenorhabditis brenneri CBN32300 I 0.000
Ppa-nhr-14 Pristionchus pacificus PPA06980 I 0.000
PPA14696 Pristionchus pacificus PPA14696 I 0.000
ASIM_0001548701 Anisakis simplex ASIM_0001548701 I 0.000
ASU_00971 Ascaris suum ASU_00971 I 0.000
BTMF_0001565301 Brugia timori BTMF_0001565301 I 0.000
BXY_0053200 Bursaphelenchus xylophilus BXY_0053200 I 0.000
BXY_0861500 Bursaphelenchus xylophilus BXY_0861500 I 0.000
BXY_1082600 Bursaphelenchus xylophilus BXY_1082600 I 0.000
CGOC_0000279901 Cylicostephanus goldi CGOC_0000279901 I 0.000
DICVIV_01644 Dictyocaulus viviparus DICVIV_01644 I 0.000
DICVIV_11073 Dictyocaulus viviparus DICVIV_11073 I 0.000
EEL_0000265301 Elaeophora elaphi EEL_0000265301 I 0.000
EVEC_0000864401 Enterobius vermicularis EVEC_0000864401 I 0.000
genemark-nMf.1.1.scaf00584-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00584-processed-gene-0.4 I 0.000
genemark-nMf.1.1.scaf02603-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf02603-processed-gene-0.3 I 0.000
GPLIN_000327200 Globodera pallida GPLIN_000327200 I 0.000
Hba_12763 Heterorhabditis bacteriophora Hba_12763 I 0.000
Hba_17038 Heterorhabditis bacteriophora Hba_17038 I 0.000
ANCDUO_15746 Ancylostoma duodenale ANCDUO_15746 I 0.000
nhr-21 Caenorhabditis elegans WBGene00003620 I 0.000
nhr-61 Caenorhabditis elegans WBGene00003651 I 0.000
nhr-62 Caenorhabditis elegans WBGene00003652 I 0.000
nhr-100 Caenorhabditis elegans WBGene00003690 I 0.000
nhr-118 Caenorhabditis elegans WBGene00003708 I 0.000
nhr-14 Caenorhabditis elegans WBGene00003613 I 0.000
WBGene00239376 Onchocerca volvulus WBGene00239376 I 0.000
Minc11307 Meloidogyne incognita Minc11307 I 0.000
nhr-4 Caenorhabditis elegans WBGene00003603 I 0.000
ACAC_0000956101 Angiostrongylus cantonensis ACAC_0000956101 I 0.000
ACOC_0000749401 Angiostrongylus costaricensis ACOC_0000749401 I 0.000
ANCCAN_20599 Ancylostoma caninum ANCCAN_20599 I 0.000
ANCCAN_22066 Ancylostoma caninum ANCCAN_22066 I 0.000
Ppa-nhr-61 Pristionchus pacificus PPA27722 I 0.000
ANCCEY_12461 Ancylostoma ceylanicum ANCCEY_12461 I 0.000
RSKR_0000426600 Rhabditophanes kr3021 RSKR_0000426600 N 0.000
NECAME_11708 Necator americanus NECAME_11708 N 0.000
ACAC_0000445401 Angiostrongylus cantonensis ACAC_0000445401 N 0.000
MhA1_Contig1031.frz3.gene17 Meloidogyne hapla MhA1_Contig1031.frz3.gene17 N 0.000
TELCIR_16512 Teladorsagia circumcincta TELCIR_16512 N 0.000