CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_018294.2
(
Lotus japonicus
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
LjSGA_018294.2
T345129_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.830
0.384
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_018294.2
TCP
1
138
KDRHSKIHTARGLRDRRMRLSLQVSKRFFGLQDMLGFDKPSETVEWLLNQAKSEINQLAGKGSSLTNSECEGAVSSLEEVVAVNGIQEQGKEPRPAVKSGRTIKRSRNSALHHPLAKECRERARERARERTKEKMRLK
Links
Other
TCP
family TFs
Other
Lotus japonicus
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.929
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.922
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.908
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.903
TCM_012252
Theobroma cacao
TCM_012252
I
0.895
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.889
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.888
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.882
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.880
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.879
PDK_20s1689851g001
Phoenix dactylifera
PDK_20s1689851g001
I
0.868
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.867
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.867
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.866
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.864
MTR_1g103380
Medicago truncatula
MTR_1g103380
I
0.863
mgf024687m
Mimulus guttatus
mgf024687m
I
0.862
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.860
Pm030202
Prunus mume
Pm030202
I
0.860
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
0.854
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
0.854
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
0.854
chr5.CM0357.550.nc
Lotus japonicus
chr5.CM0357.550.nc
I
0.853
MDP0000219838
Malus domestica
MDP0000219838
N
0.853
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.847
SapurV1A.0682s0140
Salix purpurea
SapurV1A.0682s0140
I
0.845
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
0.845
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.844
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.842
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.840
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.840
BRC2
Arabidopsis thaliana
AT1G68800
I
0.836
MDP0000224810
Malus domestica
MDP0000224810
N
0.836
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.836
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.834
POPTR_0017s13980
Populus trichocarpa
POPTR_0017s13980
I
0.831
PK12240.1
Cannabis sativa
PK12240.1
D
0.830
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.830
Cla018797
Citrullus lanatus
Cla018797
N
0.830
Bra004097
Brassica rapa
Bra004097
I
0.828
Bra034010
Brassica rapa
Bra034010
I
0.827
BRC1
Arabidopsis thaliana
AT3G18550
I
0.827
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.827
SELMODRAFT_7330
Selaginella moellendorffii
SELMODRAFT_7330
I
0.826
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
0.826
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.826
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.825
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.823
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.823
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.823
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.823
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.823