LIN54 (Loxodonta africana)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 ENSLAFG00000006640 T345299_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH

DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672 0.987
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN

NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672 0.947
lin54
M02526_2.00
Danio rerio
NHTYRAAH

DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672 0.920
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH

DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672 0.880
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN

NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672 0.840
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN

NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672 0.827
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW

WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672 0.813
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY

RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672 0.800
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH

DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672 0.680
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN

NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672 0.667
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH

DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672 0.653
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN

NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672 0.653
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW

WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672 0.653
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN

NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672 0.653
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN

NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672 0.600
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH

DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672 0.587
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH

DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672 0.587
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW

WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672 0.587
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW

WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672 0.587
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW

WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672 0.573
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW

WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672 0.573
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH

DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672 0.560
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN

NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672 0.560
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN

NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672 0.560
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN

NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672 0.547
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW

WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672 0.547
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA

TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672 0.547
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH

DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672 0.533
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000005582 TCR/CxC 522 558
ENSLAFP00000005582 TCR/CxC 596 633
ENSLAFP00000028197 TCR/CxC 390 426
ENSLAFP00000028197 TCR/CxC 464 501

Links

Other TCR/CxC family TFs
Other Loxodonta africana TFs

1214 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AARA002932 Anopheles arabiensis AARA002932 N 0.000
AATE021126 Anopheles atroparvus AATE021126 N 0.000
ACEP17061 Atta cephalotes ACEP17061 N 0.000
ACOM037726 Anopheles coluzzii ACOM037726 N 0.000
ACUA013017 Anopheles culicifacies ACUA013017 N 0.000
ADIR004658 Anopheles dirus ADIR004658 N 0.000
AEPI007520 Anopheles epiroticus AEPI007520 N 0.000
AFAF007042 Anopheles farauti AFAF007042 N 0.000
AFUN006044 Anopheles funestus AFUN006044 N 0.000
AGAP005245 Anopheles gambiae AGAP005245 N 0.000
AMAM014680 Anopheles maculatus AMAM014680 N 0.000
AMEC008887 Anopheles melas AMEC008887 N 0.000
AMEM015618 Anopheles merus AMEM015618 N 0.000
AMIN011589 Anopheles minimus AMIN011589 N 0.000
AQUA005963 Anopheles quadriannulatus AQUA005963 N 0.000
ASTEI05991 Anopheles stephensi ASTEI05991 N 0.000
Cflo_06858--XP_001120687.1_APIME Camponotus floridanus Cflo_06858--XP_001120687.1_APIME N 0.000
lola Drosophila melanogaster FBgn0005630 D 0.000
GF11099 Drosophila ananassae FBgn0088139 N 0.000
GG22736 Drosophila erecta FBgn0114901 N 0.000
GH20625 Drosophila grimshawi FBgn0128088 N 0.000
GI20185 Drosophila mojavensis FBgn0142921 N 0.000
GM20513 Drosophila sechellia FBgn0175395 N 0.000
GJ20136 Drosophila virilis FBgn0207276 N 0.000
GE13095 Drosophila yakuba FBgn0230797 N 0.000
GA30442 Drosophila pseudoobscura FBgn0264579 I 0.000
GB53491 Apis mellifera GB53491 N 0.000
LCUP002992 Lucilia cuprina LCUP002992 N 0.000
LLOJ008818 Lutzomyia longipalpis LLOJ008818 N 0.000
MDOA013378 Musca domestica MDOA013378 N 0.000
SINV11347 Solenopsis invicta SINV11347 N 0.000