30115.m001245 (Ricinus communis)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 30115.m001245 T345939_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW

WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672 0.225
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH

DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672 0.200
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN

NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672 0.200
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW

WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672 0.200
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY

RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672 0.200
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN

NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672 0.200
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH

DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672 0.200
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN

NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672 0.200
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN

NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672 0.200
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH

DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672 0.200
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW

WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672 0.200
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN

NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672 0.200
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN

NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672 0.189
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH

DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672 0.189
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN

NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672 0.187
lin54
M02526_2.00
Danio rerio
NHTYRAAH

DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672 0.187
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH

DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672 0.187
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN

NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672 0.187
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA

TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672 0.187
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH

DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672 0.184
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH

DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672 0.184
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH

DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672 0.184
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN

NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672 0.184
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN

NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672 0.184
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW

WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672 0.184
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW

WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672 0.184
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW

WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672 0.184
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW

WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672 0.184
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30115.m001245 TCR/CxC 158 194

Links

Other TCR/CxC family TFs
Other Ricinus communis TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g01698 Acanthocheilonema viteae nAv.1.0.1.g01698 I 0.000
nAv.1.0.1.g09896 Acanthocheilonema viteae nAv.1.0.1.g09896 I 0.000
ANCCAN_12539 Ancylostoma caninum ANCCAN_12539 I 0.000
ACAC_0001180201 Angiostrongylus cantonensis ACAC_0001180201 I 0.000
ACOC_0000732601 Angiostrongylus costaricensis ACOC_0000732601 I 0.000
ASIM_0001309901 Anisakis simplex ASIM_0001309901 I 0.000
ASIM_0001589901 Anisakis simplex ASIM_0001589901 I 0.000
ASU_10946 Ascaris suum ASU_10946 I 0.000
Bm14724 Brugia malayi Bm14724 I 0.000
Bm12053 Brugia malayi Bm12053 I 0.000
Bm4894 Brugia malayi Bm4894 I 0.000
BTMF_0001198801 Brugia timori BTMF_0001198801 I 0.000
BTMF_0000273701 Brugia timori BTMF_0000273701 I 0.000
BXY_1600300 Bursaphelenchus xylophilus BXY_1600300 I 0.000
BXY_0011200 Bursaphelenchus xylophilus BXY_0011200 I 0.000
BXY_1595900 Bursaphelenchus xylophilus BXY_1595900 I 0.000
BXY_0008800 Bursaphelenchus xylophilus BXY_0008800 I 0.000
CBN07936 Caenorhabditis brenneri CBN07936 I 0.000
CBN20828 Caenorhabditis brenneri CBN20828 I 0.000
CBN19233 Caenorhabditis brenneri CBN19233 I 0.000
CBG19604 Caenorhabditis briggsae CBG19604 I 0.000
CBG07552 Caenorhabditis briggsae CBG07552 I 0.000
nhr-88 Caenorhabditis elegans WBGene00003678 I 0.000
nhr-3 Caenorhabditis elegans WBGene00003602 D 0.000
CJA13646 Caenorhabditis japonica CJA13646 I 0.000
CJA04720 Caenorhabditis japonica CJA04720 I 0.000
CRE15289 Caenorhabditis remanei CRE15289 I 0.000
CRE06667 Caenorhabditis remanei CRE06667 I 0.000
DICVIV_11945 Dictyocaulus viviparus DICVIV_11945 I 0.000
nDi.2.2.2.g02781 Dirofilaria immitis nDi.2.2.2.g02781 I 0.000
nDi.2.2.2.g05078 Dirofilaria immitis nDi.2.2.2.g05078 I 0.000
DME_0000480501 Dracunculus medinensis DME_0000480501 I 0.000
DME_0000960901 Dracunculus medinensis DME_0000960901 I 0.000
GPLIN_000669000 Globodera pallida GPLIN_000669000 I 0.000
GPLIN_000268400 Globodera pallida GPLIN_000268400 I 0.000
GPUH_0000393501 Gongylonema pulchrum GPUH_0000393501 I 0.000
HCOI01268300 Haemonchus contortus HCOI01268300 I 0.000
HCOI02077900 Haemonchus contortus HCOI02077900 I 0.000
Hba_14163 Heterorhabditis bacteriophora Hba_14163 I 0.000
nLs.2.1.2.g08709 Litomosoides sigmodontis nLs.2.1.2.g08709 I 0.000
nLs.2.1.2.g05858 Litomosoides sigmodontis nLs.2.1.2.g05858 I 0.000
LOAG_18352 Loa loa LOAG_18352 I 0.000
LOAG_05485 Loa loa LOAG_05485 I 0.000
maker-nMf.1.1.scaf07948-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf07948-snap-gene-0.4 I 0.000
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 I 0.000
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 I 0.000
MhA1_Contig984.frz3.gene20 Meloidogyne hapla MhA1_Contig984.frz3.gene20 I 0.000
MhA1_Contig217.frz3.gene7 Meloidogyne hapla MhA1_Contig217.frz3.gene7 I 0.000
Minc15420 Meloidogyne incognita Minc15420 I 0.000
Minc13525 Meloidogyne incognita Minc13525 I 0.000
Minc01725 Meloidogyne incognita Minc01725 I 0.000
NECAME_04545 Necator americanus NECAME_04545 I 0.000
NECAME_05125 Necator americanus NECAME_05125 I 0.000
NBR_0000170601 Nippostrongylus brasiliensis NBR_0000170601 I 0.000
OESDEN_17109 Oesophagostomum dentatum OESDEN_17109 I 0.000
OESDEN_02943 Oesophagostomum dentatum OESDEN_02943 I 0.000
OFLC_0001511801 Onchocerca flexuosa OFLC_0001511801 I 0.000
OFLC_0000776201 Onchocerca flexuosa OFLC_0000776201 I 0.000
nOo.2.0.1.g04046 Onchocerca ochengi nOo.2.0.1.g04046 I 0.000
nOo.2.0.1.g05901 Onchocerca ochengi nOo.2.0.1.g05901 I 0.000
WBGene00248075 Onchocerca volvulus WBGene00248075 I 0.000
WBGene00241910 Onchocerca volvulus WBGene00241910 I 0.000
PEQ_0000633601 Parascaris equorum PEQ_0000633601 I 0.000
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I 0.000
PTRK_0000775900 Parastrongyloides trichosuri PTRK_0000775900 I 0.000
scaffold180-EXSNAP2012.20 Pristionchus exspectatus scaffold180-EXSNAP2012.20 I 0.000
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I 0.000
PPA02306 Pristionchus pacificus PPA02306 I 0.000
PPA20304 Pristionchus pacificus PPA20304 I 0.000
PPA21285 Pristionchus pacificus PPA21285 I 0.000
L596_g20569 Steinernema carpocapsae L596_g20569 I 0.000
L596_g3812 Steinernema carpocapsae L596_g3812 I 0.000
L596_g27086 Steinernema carpocapsae L596_g27086 I 0.000
L596_g25666 Steinernema carpocapsae L596_g25666 I 0.000
L596_g25297 Steinernema carpocapsae L596_g25297 I 0.000
L596_g27130 Steinernema carpocapsae L596_g27130 I 0.000
L889_g6303 Steinernema feltiae L889_g6303 I 0.000
L889_g8361 Steinernema feltiae L889_g8361 I 0.000
L889_g5777 Steinernema feltiae L889_g5777 I 0.000
L889_g29246 Steinernema feltiae L889_g29246 I 0.000
L889_g29204 Steinernema feltiae L889_g29204 I 0.000
L893_g29555 Steinernema glaseri L893_g29555 I 0.000
L893_g29388 Steinernema glaseri L893_g29388 I 0.000
L893_g27196 Steinernema glaseri L893_g27196 I 0.000
L893_g6878 Steinernema glaseri L893_g6878 I 0.000
L898_g4801 Steinernema monticolum L898_g4801 I 0.000
L898_g24498 Steinernema monticolum L898_g24498 I 0.000
L898_g23965 Steinernema monticolum L898_g23965 I 0.000
L898_g10316 Steinernema monticolum L898_g10316 I 0.000
L898_g14928 Steinernema monticolum L898_g14928 I 0.000
L892_g21738 Steinernema scapterisci L892_g21738 I 0.000
L892_g650 Steinernema scapterisci L892_g650 I 0.000
L892_g19201 Steinernema scapterisci L892_g19201 I 0.000
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I 0.000
SPAL_0001157400 Strongyloides papillosus SPAL_0001157400 I 0.000
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I 0.000
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I 0.000
SSTP_0000217700 Strongyloides stercoralis SSTP_0000217700 I 0.000
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I 0.000
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I 0.000
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I 0.000
SVE_1633700 Strongyloides venezuelensis SVE_1633700 I 0.000
SVUK_0001012101 Strongylus vulgaris SVUK_0001012101 I 0.000
SMUV_0000859101 Syphacia muris SMUV_0000859101 I 0.000
SMUV_0000428701 Syphacia muris SMUV_0000428701 I 0.000
TELCIR_01879 Teladorsagia circumcincta TELCIR_01879 I 0.000
TCLT_0000079701 Thelazia callipaeda TCLT_0000079701 I 0.000
TCLT_0000173501 Thelazia callipaeda TCLT_0000173501 I 0.000
TCNE_0001780601 Toxocara canis TCNE_0001780601 I 0.000
WUBG_10752 Wuchereria bancrofti WUBG_10752 I 0.000
WUBG_08518 Wuchereria bancrofti WUBG_08518 I 0.000