Cucsa.254540 (Cucumis sativus)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 Cucsa.254540 T345957_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN

NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672 0.961
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW

WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672 0.961
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW

WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672 0.961
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH

DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672 0.934
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH

DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672 0.934
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW

WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672 0.934
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW

WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672 0.934
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA

TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672 0.895
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN

NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672 0.882
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH

DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672 0.763
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN

NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672 0.671
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN

NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672 0.632
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH

DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672 0.605
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN

NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672 0.605
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH

DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672 0.605
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW

WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672 0.605
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN

NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672 0.605
lin54
M02526_2.00
Danio rerio
NHTYRAAH

DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672 0.579
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN

NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672 0.579
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH

DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672 0.566
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY

RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672 0.566
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN

NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672 0.566
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH

DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672 0.566
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN

NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672 0.566
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW

WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672 0.566
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH

DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672 0.553
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW

WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672 0.539
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN

NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672 0.539
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.254540.1 TCR/CxC 492 529
Cucsa.254540.1 TCR/CxC 578 615

Links

Other TCR/CxC family TFs
Other Cucumis sativus TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AB04375.1 Alternaria brassicicola AB04375.1 I 0.000
AOL_s00054g326 Arthrobotrys oligospora AOL_s00054g326 I 0.000
AUEXF2481DRAFT_4398 Aureobasidium subglaciale AUEXF2481DRAFT_4398 I 0.000
BAUCODRAFT_144230 Baudoinia compniacensis BAUCODRAFT_144230 I 0.000
Bcin10g03410 Botrytis cinerea Bcin10g03410 I 0.000
ANIA_04077 Aspergillus nidulans CADANIAG00004604 I 0.000
ATEG_03075 Aspergillus terreus CADATEAG00010055 I 0.000
NFIA_019220 Neosartorya fischeri CADNFIAG00000884 I 0.000
CFIO01_11469 Colletotrichum fioriniae CFIO01_11469 I 0.000
CGGC5_5606 Colletotrichum gloeosporioides CGGC5_5606 I 0.000
CHGG_02890 Chaetomium globosum CHGG_02890 I 0.000
CIMG_03917 Coccidioides immitis CIMG_03917 I 0.000
CMQ_7525 Grosmannia clavigera CMQ_7525 N 0.000
Cob_12532 Colletotrichum orbiculare Cob_12532 I 0.000
COCC4DRAFT_126547 Bipolaris maydis COCC4DRAFT_126547 I 0.000
COCCADRAFT_37717 Bipolaris zeicola COCCADRAFT_37717 I 0.000
COCMIDRAFT_84665 Bipolaris oryzae COCMIDRAFT_84665 I 0.000
COCSADRAFT_102727 Bipolaris sorokiniana COCSADRAFT_102727 I 0.000
COCVIDRAFT_34345 Bipolaris victoriae COCVIDRAFT_34345 I 0.000
CTHT_0024110 Chaetomium thermophilum CTHT_0024110 I 0.000
DOTSEDRAFT_68166 Dothistroma septosporum DOTSEDRAFT_68166 I 0.000
DRE_01415 Drechslerella stenobrocha DRE_01415 I 0.000
EPUS_04985 Endocarpon pusillum EPUS_04985 I 0.000
EURHEDRAFT_458005 Aspergillus ruber EURHEDRAFT_458005 I 0.000
e_gw1.00129.236.1 Aspergillus carbonarius e_gw1.00129.236.1 I 0.000
F503_07914 Ophiostoma piceae uamh F503_07914 I 0.000
fgenesh1_pg.C_scaffold_1000989 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000989 I 0.000
GGTG_08149 Gaeumannomyces graminis GGTG_08149 I 0.000
GLRG_03674 Colletotrichum graminicola GLRG_03674 I 0.000
H072_1719 Dactylellina haptotyla H072_1719 I 0.000
H101_07436 Trichophyton interdigitale H101_07436 N 0.000
H102_07847 Trichophyton rubrum H102_07847 N 0.000
H105_07872 Trichophyton soudanense H105_07872 N 0.000
HCBG_06971 Histoplasma capsulatum HCBG_06971 I 0.000
HMPREF1624_06509 Sporothrix schenckii HMPREF1624_06509 N 0.000
LEMA_P018010.1 Leptosphaeria maculans LEMA_P018010.1 I 0.000
M437DRAFT_83473 Aureobasidium melanogenum M437DRAFT_83473 I 0.000
M438DRAFT_281095 Aureobasidium pullulans M438DRAFT_281095 I 0.000
MAJ_01159 Metarhizium majus MAJ_01159 N 0.000
MAPG_07954 Magnaporthe poae MAPG_07954 I 0.000
MCYG_00903 Microsporum canis MCYG_00903 I 0.000
MCYG_00903 Arthroderma otae MCYG_00903 I 0.000
MGU_01854 Metarhizium guizhouense MGU_01854 N 0.000
MPH_05713 Macrophomina phaseolina MPH_05713 I 0.000
MYCFIDRAFT_97410 Pseudocercospora fijiensis MYCFIDRAFT_97410 N 0.000
MYCTH_2304200 Myceliophthora thermophila MYCTH_2304200 I 0.000
OIDMADRAFT_60194 Oidiodendron maius OIDMADRAFT_60194 I 0.000
PAAG_08645 Paracoccidioides sp lutzii PAAG_08645 I 0.000
PABG_02907 Paracoccidioides brasiliensis PABG_02907 I 0.000
Pc18g02200 Penicillium chrysogenum Pc18g02200 I 0.000
PCH_Pc18g02200 Penicillium rubens PCH_Pc18g02200 I 0.000
PDE_02765 Penicillium oxalicum PDE_02765 I 0.000
PDIP_73930 Penicillium digitatum PDIP_73930 I 0.000
PEX1_076370 Penicillium expansum PEX1_076370 I 0.000
PFICI_03782 Pestalotiopsis fici PFICI_03782 I 0.000
PITC_027910 Penicillium italicum PITC_027910 I 0.000
PMAA_024740 Penicillium marneffei PMAA_024740 I 0.000
PMAA_024740 Talaromyces marneffei PMAA_024740 I 0.000
PODANS_7_2090 Podospora anserina PODANS_7_2090 I 0.000
PTRG_00243 Pyrenophora triticirepentis PTRG_00243 I 0.000
PTT_13020 Pyrenophora teres PTT_13020 I 0.000
PV09_02665 Verruconis gallopava PV09_02665 I 0.000
PVAR5_6448 Byssochlamys spectabilis PVAR5_6448 I 0.000
SAPIO_CDS5850 Scedosporium apiospermum SAPIO_CDS5850 I 0.000
SBOR_2000 Sclerotinia borealis SBOR_2000 I 0.000
SEPMUDRAFT_146146 Sphaerulina musiva SEPMUDRAFT_146146 N 0.000
SETTUDRAFT_102560 Setosphaeria turcica SETTUDRAFT_102560 I 0.000
SNOG_11811 Phaeosphaeria nodorum SNOG_11811 I 0.000
SPBR_00313 Sporothrix brasiliensis SPBR_00313 N 0.000
SS1G_06977 Sclerotinia sclerotiorum SS1G_06977 I 0.000
TEQG_01462 Trichophyton equinum TEQG_01462 N 0.000
TSTA_033430 Talaromyces stipitatus TSTA_033430 I 0.000
U727_00431293291 Penicillium solitum U727_00431293291 I 0.000
UCRNP2_6191 Neofusicoccum parvum UCRNP2_6191 I 0.000
VDAG_06431 Verticillium dahliae VDAG_06431 I 0.000
W97_02650 Coniosporium apollinis W97_02650 I 0.000