fgenesh4_pg.C_scaffold_35000067 (Volvox carteri)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 fgenesh4_pg.C_scaffold_35000067 T345975_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH

DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672 0.707
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH

DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672 0.707
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW

WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672 0.707
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW

WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672 0.707
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW

WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672 0.707
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW

WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672 0.707
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN

NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672 0.680
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA

TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672 0.680
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN

NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672 0.667
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH

DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672 0.640
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN

NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672 0.613
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN

NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672 0.573
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW

WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672 0.547
lin54
M02526_2.00
Danio rerio
NHTYRAAH

DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672 0.547
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY

RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672 0.547
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN

NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672 0.547
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH

DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672 0.547
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH

DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672 0.533
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN

NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672 0.533
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN

NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672 0.533
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH

DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672 0.533
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW

WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672 0.533
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW

WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672 0.533
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN

NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672 0.533
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH

DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672 0.520
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN

NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672 0.520
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN

NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672 0.520
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH

DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672 0.467
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh4_pg.C_scaffold_35000067 TCR/CxC 787 823
fgenesh4_pg.C_scaffold_35000067 TCR/CxC 859 896

Links

Other TCR/CxC family TFs
Other Volvox carteri TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R006754 Calypte anna Aan_R006754 I 0.000
Aan_R010578 Calypte anna Aan_R010578 I 0.000
Afo_R004114 Aptenodytes forsteri Afo_R004114 I 0.000
Afo_R015456 Aptenodytes forsteri Afo_R015456 I 0.000
Brh_R001953 Buceros rhinoceros Brh_R001953 I 0.000
Brh_R012783 Buceros rhinoceros Brh_R012783 N 0.000
ENSAMEG00000005350 Ailuropoda melanoleuca ENSAMEG00000005350 I 0.000
ENSAMEG00000009099 Ailuropoda melanoleuca ENSAMEG00000009099 N 0.000
ENSAMXG00000002186 Astyanax mexicanus ENSAMXG00000002186 I 0.000
ENSAMXG00000015155 Astyanax mexicanus ENSAMXG00000015155 I 0.000
ENSAPLG00000008131 Anas platyrhynchos ENSAPLG00000008131 I 0.000
ENSAPLG00000009362 Anas platyrhynchos ENSAPLG00000009362 I 0.000
ENSCSAG00000009921 Chlorocebus sabaeus ENSCSAG00000009921 N 0.000
ENSCSAG00000011380 Chlorocebus sabaeus ENSCSAG00000011380 I 0.000
ENSFALG00000004242 Ficedula albicollis ENSFALG00000004242 I 0.000
ENSFALG00000009258 Ficedula albicollis ENSFALG00000009258 I 0.000
ENSGMOG00000006865 Gadus morhua ENSGMOG00000006865 I 0.000
ENSGMOG00000007176 Gadus morhua ENSGMOG00000007176 N 0.000
ENSGMOG00000011439 Gadus morhua ENSGMOG00000011439 N 0.000
ENSGMOG00000013657 Gadus morhua ENSGMOG00000013657 I 0.000
ENSLACG00000005399 Latimeria chalumnae ENSLACG00000005399 I 0.000
ENSLACG00000017798 Latimeria chalumnae ENSLACG00000017798 I 0.000
ENSLOCG00000004032 Lepisosteus oculatus ENSLOCG00000004032 I 0.000
ENSLOCG00000006524 Lepisosteus oculatus ENSLOCG00000006524 I 0.000
ENSMMUG00000019009 Macaca mulatta ENSMMUG00000019009 I 0.000
ENSMPUG00000001406 Mustela putorius furo ENSMPUG00000001406 I 0.000
ENSMPUG00000007972 Mustela putorius furo ENSMPUG00000007972 I 0.000
ENSNLEG00000000912 Nomascus leucogenys ENSNLEG00000000912 I 0.000
ENSNLEG00000006893 Nomascus leucogenys ENSNLEG00000006893 I 0.000
ENSOANG00000004992 Ornithorhynchus anatinus ENSOANG00000004992 I 0.000
ENSOARG00000015604 Ovis aries ENSOARG00000015604 I 0.000
ENSOARG00000015783 Ovis aries ENSOARG00000015783 I 0.000
ENSONIG00000004539 Oreochromis niloticus ENSONIG00000004539 N 0.000
ENSONIG00000008688 Oreochromis niloticus ENSONIG00000008688 I 0.000
ENSONIG00000013780 Oreochromis niloticus ENSONIG00000013780 I 0.000
ENSONIG00000015271 Oreochromis niloticus ENSONIG00000015271 I 0.000
ENSP00000333367 Macaca fascicularis ENSP00000333367 I 0.000
ENSP00000333367-D2 Bos grunniens ENSP00000333367-D2 N 0.000
ENSP00000401112-D1 Bos grunniens ENSP00000401112-D1 I 0.000
ENSP00000405420 Macaca fascicularis ENSP00000405420 I 0.000
ENSPANG00000004656 Papio anubis ENSPANG00000004656 N 0.000
ENSPANG00000011212 Papio anubis ENSPANG00000011212 I 0.000
ENSPFOG00000000642 Poecilia formosa ENSPFOG00000000642 I 0.000
ENSPFOG00000003900 Poecilia formosa ENSPFOG00000003900 I 0.000
ENSPFOG00000004509 Poecilia formosa ENSPFOG00000004509 I 0.000
ENSPFOG00000005488 Poecilia formosa ENSPFOG00000005488 I 0.000
ENSPMAG00000005314 Petromyzon marinus ENSPMAG00000005314 I 0.000
ENSPPYG00000013052 Pongo abelii ENSPPYG00000013052 I 0.000
ENSPPYG00000014077 Pongo abelii ENSPPYG00000014077 I 0.000
ENSPSIG00000018044 Pelodiscus sinensis ENSPSIG00000018044 I 0.000
ENSSHAG00000011077 Sarcophilus harrisii ENSSHAG00000011077 I 0.000
ENSSHAG00000015368 Sarcophilus harrisii ENSSHAG00000015368 I 0.000
ENSSSCG00000030990 Sus scrofa ENSSSCG00000030990 N 0.000
ENSSTOG00000024964 Ictidomys tridecemlineatus ENSSTOG00000024964 N 0.000
ENSTRUG00000009881 Takifugu rubripes ENSTRUG00000009881 N 0.000
ENSTSYG00000005284 Tarsius syrichta ENSTSYG00000005284 I 0.000
ENSXMAG00000000865 Xiphophorus maculatus ENSXMAG00000000865 I 0.000
ENSXMAG00000004215 Xiphophorus maculatus ENSXMAG00000004215 I 0.000
ENSXMAG00000007412 Xiphophorus maculatus ENSXMAG00000007412 I 0.000
ENSXMAG00000018662 Xiphophorus maculatus ENSXMAG00000018662 I 0.000
Gfo_R001489 Geospiza fortis Gfo_R001489 I 0.000
Gfo_R015811 Geospiza fortis Gfo_R015811 I 0.000
Myotis_brandtii_Satb1_10034564 Myotis brandtii Myotis_brandtii_Satb1_10034564 I 0.000
Myotis_brandtii_Satb2_10019975 Myotis brandtii Myotis_brandtii_Satb2_10019975 I 0.000
Ogr08410 Ophisaurus gracilis Ogr08410 I 0.000
Ogr08679 Ophisaurus gracilis Ogr08679 I 0.000
Pvit_10645 Pogona vitticeps Pvit_10645 I 0.000
Pvit_16605 Pogona vitticeps Pvit_16605 I 0.000
SATB1 Myotis lucifugus ENSMLUG00000001860 I 0.000
SATB1 Bos taurus ENSBTAG00000021158 I 0.000
SATB1 Otolemur garnettii ENSOGAG00000015441 I 0.000
SATB1 Taeniopygia guttata ENSTGUG00000003198 I 0.000
SATB1 Oryctolagus cuniculus ENSOCUG00000007174 I 0.000
SATB1 Callithrix jacchus ENSCJAG00000003645 I 0.000
SATB1 Sus scrofa ENSSSCG00000011201 I 0.000
SATB1 Choloepus hoffmanni ENSCHOG00000002142 I 0.000
SATB1 Pan troglodytes ENSPTRG00000014677 I 0.000
SATB1 Procavia capensis ENSPCAG00000008567 I 0.000
SATB1 Vicugna pacos ENSVPAG00000011890 N 0.000
SATB1 Anolis carolinensis ENSACAG00000007941 I 0.000
SATB1 Tursiops truncatus ENSTTRG00000006209 I 0.000
SATB1 Sorex araneus ENSSARG00000006820 N 0.000
SATB1 Cavia porcellus ENSCPOG00000007101 I 0.000
satb1 Xenopus tropicalis XB-GENE-854103 I 0.000
SATB1 Equus caballus ENSECAG00000023585 I 0.000
SATB1 Loxodonta africana ENSLAFG00000009015 I 0.000
SATB1 Canis familiaris ENSCAFG00000005839 N 0.000
SATB1 Erinaceus europaeus ENSEEUG00000010435 I 0.000
SATB1 Felis catus ENSFCAG00000004295 I 0.000
SATB1 Gorilla gorilla ENSGGOG00000001779 I 0.000
SATB1 Gallus gallus ENSGALG00000011254 I 0.000
SATB1 Homo sapiens ENSG00000182568 D 0.000
SATB1 Meleagris gallopavo ENSMGAG00000010929 I 0.000
SATB1 Microcebus murinus ENSMICG00000017153 I 0.000
Satb1 Dipodomys ordii ENSDORG00000005578 I 0.000
Satb1 Mus musculus ENSMUSG00000023927 I 0.000
SATB1 Monodelphis domestica ENSMODG00000014765 I 0.000
SATB1 Dasypus novemcinctus ENSDNOG00000025323 I 0.000
satb1a Oryzias latipes ENSORLG00000004761 N 0.000
satb1a Tetraodon nigroviridis ENSTNIG00000017750 N 0.000
satb1a Danio rerio ENSDARG00000057649 N 0.000
satb1a Takifugu rubripes ENSTRUG00000005121 N 0.000
satb1a Gasterosteus aculeatus ENSGACG00000006960 N 0.000
satb1b Tetraodon nigroviridis ENSTNIG00000011663 I 0.000
satb1b Gasterosteus aculeatus ENSGACG00000013013 I 0.000
satb1b Danio rerio ENSDARG00000062621 I 0.000
satb2 Takifugu rubripes ENSTRUG00000005073 I 0.000
satb2 Tetraodon nigroviridis ENSTNIG00000014467 I 0.000
SATB2 Tetraodon nigroviridis ENSTNIG00000005271 I 0.000
SATB2 Loxodonta africana ENSLAFG00000002924 I 0.000
satb2 Xenopus tropicalis XB-GENE-5822252 I 0.000
SATB2 Takifugu rubripes ENSTRUG00000015384 I 0.000
SATB2 Taeniopygia guttata ENSTGUG00000010480 I 0.000
SATB2 Otolemur garnettii ENSOGAG00000006949 I 0.000
satb2 Danio rerio ENSDARG00000061885 I 0.000
Satb2 Mus musculus ENSMUSG00000038331 I 0.000
SATB2 Dasypus novemcinctus ENSDNOG00000001292 I 0.000
SATB2 Monodelphis domestica ENSMODG00000012352 I 0.000
SATB2 Myotis lucifugus ENSMLUG00000001554 I 0.000
SATB2 Microcebus murinus ENSMICG00000009378 I 0.000
SATB2 Meleagris gallopavo ENSMGAG00000007173 I 0.000
SATB2 Equus caballus ENSECAG00000010043 I 0.000
SATB2 Felis catus ENSFCAG00000015781 I 0.000
SATB2 Homo sapiens ENSG00000119042 I 0.000
SATB2 Gorilla gorilla ENSGGOG00000014123 I 0.000
satb2 Gasterosteus aculeatus ENSGACG00000014437 I 0.000
SATB2 Cavia porcellus ENSCPOG00000015198 I 0.000
SATB2 Callithrix jacchus ENSCJAG00000004111 I 0.000
SATB2 Oryctolagus cuniculus ENSOCUG00000009700 I 0.000
SATB2 Sorex araneus ENSSARG00000014343 I 0.000
Satb2 Rattus norvegicus ENSRNOG00000010188 I 0.000
SATB2 Pteropus vampyrus ENSPVAG00000012029 I 0.000
SATB2 Pan troglodytes ENSPTRG00000012779 I 0.000
SATB2 Anolis carolinensis ENSACAG00000009821 I 0.000
SATB2 Bos taurus ENSBTAG00000016334 I 0.000
SATB2 Procavia capensis ENSPCAG00000012822 I 0.000
SATB2 Canis familiaris ENSCAFG00000010971 I 0.000
SATB2 Ochotona princeps ENSOPRG00000003979 I 0.000
SATB2 Choloepus hoffmanni ENSCHOG00000012005 I 0.000
SATB2 Gallus gallus ENSGALG00000008135 I 0.000
SATB2 Gasterosteus aculeatus ENSGACG00000009037 I 0.000
Tal_R004830 Tyto alba Tal_R004830 N 0.000
Tal_R006309 Tyto alba Tal_R006309 I 0.000