Gorai.009G025900 (Gossypium raimondii)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 Gorai.009G025900 T346073_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH

DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672 0.787
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN

NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672 0.750
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW

WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672 0.750
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN

NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672 0.750
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN

NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672 0.672
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH

DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672 0.720
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN

NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672 0.640
lin54
M02526_2.00
Danio rerio
NHTYRAAH

DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672 0.627
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH

DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672 0.627
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH

DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672 0.594
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN

NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672 0.594
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN

NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672 0.604
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW

WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672 0.613
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN

NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672 0.600
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW

WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672 0.566
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH

DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672 0.560
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY

RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672 0.528
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH

DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672 0.516
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH

DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672 0.560
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW

WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672 0.560
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN

NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672 0.509
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW

WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672 0.560
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW

WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672 0.547
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW

WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672 0.547
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN

NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672 0.520
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA

TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672 0.469
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN

NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672 0.453
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH

DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672 0.453
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G025900.1 TCR/CxC 69 105
Gorai.009G025900.1 TCR/CxC 153 190
Gorai.009G025900.2 TCR/CxC 45 70
Gorai.009G025900.2 TCR/CxC 118 155
Gorai.009G025900.3 TCR/CxC 69 105
Gorai.009G025900.3 TCR/CxC 153 190
Gorai.009G025900.4 TCR/CxC 45 70
Gorai.009G025900.4 TCR/CxC 118 155
Gorai.009G025900.5 TCR/CxC 69 105
Gorai.009G025900.5 TCR/CxC 153 190
Gorai.009G025900.6 TCR/CxC 45 70
Gorai.009G025900.6 TCR/CxC 118 155
Gorai.009G025900.7 TCR/CxC 45 70
Gorai.009G025900.7 TCR/CxC 118 155
Gorai.009G025900.8 TCR/CxC 1 15
Gorai.009G025900.8 TCR/CxC 63 100

Links

Other TCR/CxC family TFs
Other Gossypium raimondii TFs

1214 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000003669 Ailuropoda melanoleuca ENSAMEG00000003669 N 0.000
ENSBTAP00000000060-D1 Bos grunniens ENSBTAP00000000060-D1 N 0.000
ENSCSAG00000015779 Chlorocebus sabaeus ENSCSAG00000015779 N 0.000
ENSMMUP00000004120 Macaca fascicularis ENSMMUP00000004120 N 0.000
ENSMPUG00000011503 Mustela putorius furo ENSMPUG00000011503 N 0.000
ENSNLEG00000008175 Nomascus leucogenys ENSNLEG00000008175 N 0.000
ENSOARG00000004360 Ovis aries ENSOARG00000004360 N 0.000
ENSPANG00000026126 Papio anubis ENSPANG00000026126 N 0.000
ENSPPYG00000019771 Pongo abelii ENSPPYG00000019771 N 0.000
ENSPSIG00000009848 Pelodiscus sinensis ENSPSIG00000009848 N 0.000
ENSSTOG00000014067 Ictidomys tridecemlineatus ENSSTOG00000014067 N 0.000
Ogr05273 Ophisaurus gracilis Ogr05273 N 0.000
SNAPC4 Monodelphis domestica ENSMODG00000017566 N 0.000
SNAPC4 Canis familiaris ENSCAFG00000019683 N 0.000
SNAPC4 Callithrix jacchus ENSCJAG00000010725 N 0.000
SNAPC4 Tursiops truncatus ENSTTRG00000007574 N 0.000
SNAPC4 Tupaia belangeri ENSTBEG00000013641 N 0.000
SNAPC4 Dasypus novemcinctus ENSDNOG00000025543 N 0.000
Snapc4 Rattus norvegicus ENSRNOG00000018845 N 0.000
SNAPC4 Pteropus vampyrus ENSPVAG00000001344 N 0.000
SNAPC4 Pan troglodytes ENSPTRG00000021554 N 0.000
SNAPC4 Equus caballus ENSECAG00000015762 N 0.000
SNAPC4 Erinaceus europaeus ENSEEUG00000007039 N 0.000
SNAPC4 Procavia capensis ENSPCAG00000013146 N 0.000
SNAPC4 Felis catus ENSFCAG00000028095 N 0.000
SNAPC4 Otolemur garnettii ENSOGAG00000015861 N 0.000
SNAPC4 Homo sapiens ENSG00000165684 N 0.000
SNAPC4 Microcebus murinus ENSMICG00000005804 N 0.000
SNAPC4 Macaca mulatta ENSMMUG00000003086 N 0.000
Snapc4 Mus musculus ENSMUSG00000036281 N 0.000
SNAPC4 Ornithorhynchus anatinus ENSOANG00000006899 N 0.000