MDP0000248670 (Malus domestica)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 MDP0000248670 T346101_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN

NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672 0.803
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW

WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672 0.803
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW

WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672 0.803
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH

DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672 0.789
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH

DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672 0.789
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN

NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672 0.789
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW

WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672 0.789
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW

WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672 0.789
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA

TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672 0.789
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH

DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672 0.697
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN

NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672 0.632
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN

NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672 0.632
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH

DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672 0.618
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN

NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672 0.618
lin54
M02526_2.00
Danio rerio
NHTYRAAH

DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672 0.618
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW

WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672 0.618
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN

NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672 0.618
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH

DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672 0.605
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH

DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672 0.605
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY

RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672 0.592
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH

DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672 0.592
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW

WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672 0.579
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN

NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672 0.579
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN

NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672 0.579
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN

NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672 0.579
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW

WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672 0.579
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN

NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672 0.553
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH

DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672 0.526
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000248670 TCR/CxC 488 525
MDP0000248670 TCR/CxC 567 604

Links

Other TCR/CxC family TFs
Other Malus domestica TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZSCAN23 Homo sapiens ENSG00000187987 D 0.000
ZSCAN23 Bos taurus ENSBTAG00000037965 I 0.000
ZSCAN23 Oryctolagus cuniculus ENSOCUG00000029301 I 0.000
ZSCAN23 Otolemur garnettii ENSOGAG00000006605 I 0.000
ENSPANG00000012448 Papio anubis ENSPANG00000012448 I 0.000
ZSCAN23 Procavia capensis ENSPCAG00000015061 I 0.000
ENSPPYG00000016373 Pongo abelii ENSPPYG00000016373 I 0.000
ZSCAN23 Pan troglodytes ENSPTRG00000017876 I 0.000
ZSCAN23 Sorex araneus ENSSARG00000008482 I 0.000
ENSSTOG00000004477 Ictidomys tridecemlineatus ENSSTOG00000004477 I 0.000
ENSTSYG00000000711 Tarsius syrichta ENSTSYG00000000711 I 0.000
ZSCAN23 Vicugna pacos ENSVPAG00000000043 I 0.000
ENSNLEG00000004577 Nomascus leucogenys ENSNLEG00000004577 I 0.000
ENSMPUG00000001273 Mustela putorius furo ENSMPUG00000001273 I 0.000
ZSCAN23 Canis familiaris ENSCAFG00000024985 I 0.000
ZSCAN23 Choloepus hoffmanni ENSCHOG00000004064 I 0.000
ZSCAN23 Callithrix jacchus ENSCJAG00000018616 I 0.000
ENSCSAG00000008044 Chlorocebus sabaeus ENSCSAG00000008044 I 0.000
ZSCAN23 Equus caballus ENSECAG00000016879 I 0.000
ENSEEUG00000006981 Erinaceus europaeus ENSEEUG00000006981 I 0.000
ZSCAN23 Gorilla gorilla ENSGGOG00000024543 I 0.000
ZSCAN23 Microcebus murinus ENSMICG00000010510 I 0.000
ZSCAN23 Macaca mulatta ENSMMUG00000012396 I 0.000
ZSCAN9 Monodelphis domestica ENSMODG00000008321 I 0.000
ENSP00000289788 Macaca fascicularis ENSP00000289788 I 0.000