CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ea03028
(
Panicum virgatum
)
TCR/CxC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03638 (TCR)
IPR005172
Pavir.Ea03028
T346131_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH
DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672
0.867
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672
0.867
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672
0.867
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672
0.867
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672
0.813
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN
NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672
0.760
lin54
M02526_2.00
Danio rerio
NHTYRAAH
DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672
0.667
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN
NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672
0.653
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672
0.653
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH
DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672
0.640
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672
0.640
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN
NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672
0.627
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672
0.627
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672
0.613
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672
0.600
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH
DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672
0.600
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672
0.600
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672
0.600
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672
0.587
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW
WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672
0.587
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY
RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672
0.587
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672
0.587
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672
0.587
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672
0.560
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672
0.560
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672
0.560
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN
NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672
0.520
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH
DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672
0.493
For this family, TFs with SR scores >
0.660
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ea03028.1.p
TCR/CxC
61
97
KKCCNCRNSRCLKLYCECFASGAHCDGCNCTNCFNNP
Pavir.Ea03028.1.p
TCR/CxC
173
210
NKGCHGKKSGCLQKYCECFQANILCSENCKCMDCKNFE
Links
Other
TCR/CxC
family TFs
Other
Panicum virgatum
TFs
1213 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AALB009393
Anopheles albimanus
AALB009393
I
0.000
AARA001656
Anopheles arabiensis
AARA001656
I
0.000
AATE021108
Anopheles atroparvus
AATE021108
I
0.000
ACHR007539
Anopheles christyi
ACHR007539
I
0.000
ACOM033756
Anopheles coluzzii
ACOM033756
I
0.000
ACUA025676
Anopheles culicifacies
ACUA025676
I
0.000
ADIR010044
Anopheles dirus
ADIR010044
I
0.000
AFAF007581
Anopheles farauti
AFAF007581
I
0.000
AFUN009221
Anopheles funestus
AFUN009221
I
0.000
AMAM006284
Anopheles maculatus
AMAM006284
I
0.000
AMEC003386
Anopheles melas
AMEC003386
I
0.000
AMEC015151
Anopheles melas
AMEC015151
I
0.000
AMEM001654
Anopheles merus
AMEM001654
I
0.000
AMIN002289
Anopheles minimus
AMIN002289
I
0.000
AQUA006380
Anopheles quadriannulatus
AQUA006380
I
0.000
ASIS019148
Anopheles sinensis
ASIS019148
I
0.000
ASTEI08021
Anopheles stephensi
ASTEI08021
I
0.000
BGIBMGA013198
Bombyx mori
BGIBMGA013198
D
0.000
KGM_08612
Danaus plexippus
KGM_08612
I
0.000
DAPPUDRAFT_43067
Daphnia pulex
DAPPUDRAFT_43067
I
0.000
YQE_05964
Dendroctonus ponderosae
YQE_05964
I
0.000
GI15686
Drosophila mojavensis
FBgn0138435
I
0.000
HMEL014166
Heliconius melpomene
HMEL014166
I
0.000
LCUP013174
Lucilia cuprina
LCUP013174
I
0.000
PHUM322020
Pediculus humanus
PHUM322020
I
0.000
PPAI008545
Phlebotomus papatasi
PPAI008545
I
0.000
SINV23626
Solenopsis invicta
SINV23626
I
0.000