CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Ea03028 *(Panicum virgatum)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03638 (TCR)	IPR005172	Pavir.Ea03028	T346131_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.867
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.867
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.867
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.867
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.813
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.760
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.667
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.653
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.653
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.640
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.640
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.627
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.627
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.613
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.600
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.600
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.600
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.600
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.587
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.587
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.587
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.587
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.587
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.560
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.560
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.560
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.520
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.493
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Ea03028.1.p	TCR/CxC	61	97	KKCCNCRNSRCLKLYCECFASGAHCDGCNCTNCFNNP
Pavir.Ea03028.1.p	TCR/CxC	173	210	NKGCHGKKSGCLQKYCECFQANILCSENCKCMDCKNFE

Links
Other TCR/CxC family TFs
Other *Panicum virgatum* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AALB009393	Anopheles albimanus	AALB009393	I	0.000
AARA001656	Anopheles arabiensis	AARA001656	I	0.000
AATE021108	Anopheles atroparvus	AATE021108	I	0.000
ACHR007539	Anopheles christyi	ACHR007539	I	0.000
ACOM033756	Anopheles coluzzii	ACOM033756	I	0.000
ACUA025676	Anopheles culicifacies	ACUA025676	I	0.000
ADIR010044	Anopheles dirus	ADIR010044	I	0.000
AFAF007581	Anopheles farauti	AFAF007581	I	0.000
AFUN009221	Anopheles funestus	AFUN009221	I	0.000
AMAM006284	Anopheles maculatus	AMAM006284	I	0.000
AMEC003386	Anopheles melas	AMEC003386	I	0.000
AMEC015151	Anopheles melas	AMEC015151	I	0.000
AMEM001654	Anopheles merus	AMEM001654	I	0.000
AMIN002289	Anopheles minimus	AMIN002289	I	0.000
AQUA006380	Anopheles quadriannulatus	AQUA006380	I	0.000
ASIS019148	Anopheles sinensis	ASIS019148	I	0.000
ASTEI08021	Anopheles stephensi	ASTEI08021	I	0.000
BGIBMGA013198	Bombyx mori	BGIBMGA013198	D	0.000
KGM_08612	Danaus plexippus	KGM_08612	I	0.000
DAPPUDRAFT_43067	Daphnia pulex	DAPPUDRAFT_43067	I	0.000
YQE_05964	Dendroctonus ponderosae	YQE_05964	I	0.000
GI15686	Drosophila mojavensis	FBgn0138435	I	0.000
HMEL014166	Heliconius melpomene	HMEL014166	I	0.000
LCUP013174	Lucilia cuprina	LCUP013174	I	0.000
PHUM322020	Pediculus humanus	PHUM322020	I	0.000
PPAI008545	Phlebotomus papatasi	PPAI008545	I	0.000
SINV23626	Solenopsis invicta	SINV23626	I	0.000

Pavir.Ea03028 (Panicum virgatum) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

Pavir.Ea03028 **(Panicum virgatum)
TCR/CxC**