SapurV1A.0853s0040 (Salix purpurea)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 SapurV1A.0853s0040 T346154_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH

DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672 0.947
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN

NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672 0.947
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW

WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672 0.947
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN

NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672 0.947
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH

DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672 0.840
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN

NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672 0.813
lin54
M02526_2.00
Danio rerio
NHTYRAAH

DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672 0.680
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN

NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672 0.680
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH

DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672 0.667
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW

WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672 0.667
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH

DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672 0.653
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN

NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672 0.653
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN

NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672 0.640
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN

NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672 0.627
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH

DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672 0.613
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH

DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672 0.613
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW

WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672 0.613
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW

WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672 0.613
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW

WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672 0.600
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW

WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672 0.600
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW

WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672 0.600
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN

NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672 0.587
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY

RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672 0.587
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN

NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672 0.573
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA

TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672 0.573
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH

DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672 0.560
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN

NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672 0.560
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH

DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672 0.533
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0853s0040.1.p TCR/CxC 125 161
SapurV1A.0853s0040.1.p TCR/CxC 210 247

Links

Other TCR/CxC family TFs
Other Salix purpurea TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SHN2 Arabidopsis thaliana AT5G11190 D 0.000
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I 0.000
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I 0.000
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I 0.000
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I 0.000
Carubv10003050m.g Capsella rubella Carubv10003050m.g I 0.000
Carubv10003042m.g Capsella rubella Carubv10003042m.g I 0.000
Carubv10002040m.g Capsella rubella Carubv10002040m.g I 0.000
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I 0.000
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I 0.000
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I 0.000
mgf017744m Mimulus guttatus mgf017744m I 0.000
Cucsa.310360 Cucumis sativus Cucsa.310360 I 0.000
Gorai.001G033200 Gossypium raimondii Gorai.001G033200 I 0.000
Gorai.004G292600 Gossypium raimondii Gorai.004G292600 I 0.000
Thhalv10015363m.g Eutrema salsugineum Thhalv10015363m.g I 0.000
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I 0.000
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I 0.000
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I 0.000
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I 0.000
MDP0000287350 Malus domestica MDP0000287350 I 0.000
MDP0000178263 Malus domestica MDP0000178263 I 0.000
Lus10019414.g Linum usitatissimum Lus10019414.g I 0.000
Lus10002912.g Linum usitatissimum Lus10002912.g I 0.000
Lus10002015.g Linum usitatissimum Lus10002015.g I 0.000
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I 0.000
cassava40012.m1 Manihot esculenta cassava40012.m1 I 0.000
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I 0.000
MTR_1g012470 Medicago truncatula MTR_1g012470 I 0.000
GLYMA17G31900 Glycine max GLYMA17G31900 I 0.000
GLYMA06G07240 Glycine max GLYMA06G07240 I 0.000
GLYMA04G07140 Glycine max GLYMA04G07140 I 0.000
SHN2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002026 I 0.000
Bra036543 Brassica rapa Bra036543 I 0.000
Bra008985 Brassica rapa Bra008985 I 0.000
Bo9g171490 Brassica oleracea Bo9g171490 I 0.000
Bo9g011380 Brassica oleracea Bo9g011380 I 0.000
SHN3 Arabidopsis thaliana AT5G25390 I 0.000
MTR_3g107380 Medicago truncatula MTR_3g107380 I 0.000
PGSC0003DMG400030228 Solanum tuberosum PGSC0003DMG400030228 I 0.000
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I 0.000
cassava10120.m1 Manihot esculenta cassava10120.m1 I 0.000
29848.m004632 Ricinus communis 29848.m004632 I 0.000
Pm004616 Prunus mume Pm004616 I 0.000
Cla021283 Citrullus lanatus Cla021283 I 0.000
Ca_09050 Cicer arietinum Ca_09050 I 0.000
Ca_01764 Cicer arietinum Ca_01764 I 0.000
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I 0.000
TCM_037007 Theobroma cacao TCM_037007 I 0.000
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I 0.000
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I 0.000
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I 0.000
Bo7g096000 Brassica oleracea Bo7g096000 N 0.000