prkrirb (Danio rerio)
THAP finger

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05485 (THAP) IPR006612 ENSDARG00000020964 T348255_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
prkrirb
M02536_2.00
Danio rerio
NNMCMGMSGGNN

NNCCSKCKGKNN
PBM
Weirauch et al.(2014)
pTH8319
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
prkrirb
M02540_2.00
Oryzias latipes
NNBBCCGGNHN

NDNCCGGVVNN
PBM
Weirauch et al.(2014)
pTH9383
0.924 0.924
prkrirb
M02541_2.00
Tetraodon nigroviridis
CCCGCGGG

CCCGCGGG
PBM
Weirauch et al.(2014)
pTH8574
0.924 0.924
THAP12
M02538_2.00
Homo sapiens
NNNYMBNNBGRN

NYCVNNVKRNNN
PBM
Weirauch et al.(2014)
pTH9190
0.899 0.899
THAP12
M02539_2.00
Gallus gallus
NBNYCKGKMNNN

NNNKMCMGRNVN
PBM
Weirauch et al.(2014)
pTH8688
0.861 0.861
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02536_2.00 THAP finger 4 88

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000007187 THAP finger 4 88

Links

Other THAP finger family TFs
Other Danio rerio TFs

Invalid Input OrderBy

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action