Cagra.0147s0016 (Capsella grandiflora)
Whirly

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08536 (Whirly) IPR013742 Cagra.0147s0016 T350616_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0147s0016.1.p Whirly 58 193

Links

Other Whirly family TFs
Other Capsella grandiflora TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10020880m.g Capsella rubella Carubv10020880m.g N 0.993
WHY2 Arabidopsis thaliana AT1G71260 N 0.919
ATWHY2 Arabidopsis lyrata scaffold_202038.1 N 0.919
Thhalv10019058m.g Eutrema salsugineum Thhalv10019058m.g N 0.897
Bostr.10273s0220 Boechera stricta Bostr.10273s0220 N 0.875
SapurV1A.0002s0060 Salix purpurea SapurV1A.0002s0060 N 0.801
Bra016150 Brassica rapa Bra016150 N 0.787
Bo6g112840 Brassica oleracea Bo6g112840 N 0.779
Lus10035067.g Linum usitatissimum Lus10035067.g N 0.779
Lus10017892.g Linum usitatissimum Lus10017892.g N 0.772
mgf015710m Mimulus guttatus mgf015710m N 0.765
Solyc11g044750.1 Solanum lycopersicum Solyc11g044750.1 N 0.757
MDP0000168614 Malus domestica MDP0000168614 N 0.757
PGSC0003DMG400022930 Solanum tuberosum PGSC0003DMG400022930 N 0.750
evm.TU.supercontig_249.9 Carica papaya evm.TU.supercontig_249.9 N 0.750
Eucgr.K01091 Eucalyptus grandis Eucgr.K01091 N 0.743
Pm022821 Prunus mume Pm022821 N 0.735
PRUPE_ppa011529mg Prunus persica PRUPE_ppa011529mg N 0.735
chr1.LjT14G19.90.nc Lotus japonicus chr1.LjT14G19.90.nc N 0.721
cassava24783.valid.m1 Manihot esculenta cassava24783.valid.m1 N 0.721
MTR_7g116270 Medicago truncatula MTR_7g116270 N 0.721
TCM_035992 Theobroma cacao TCM_035992 N 0.713
GLYMA19G43880 Glycine max GLYMA19G43880 N 0.706
orange1.1g026312m.g Citrus sinensis orange1.1g026312m.g N 0.706