AtGRF6 (Arabidopsis thaliana)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF08879 (WRC) IPR014977 AT2G06200 T350683_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtGRF6
M02545_2.00		 Arabidopsis thaliana
NNNNYDNN
NNHRNNNN		 PBM
Weirauch et al.(2014)
pTH7356		 (Direct) (Direct)
AtGRF6
M07369_2.00		 Arabidopsis thaliana
NNNNNHNTGTCAGA
TCTGACANDNNNNN		 Dap-seq
OMalley et al.(2016)
AtGRF6_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02545_2.00 WRC 52 94

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G06200.1 WRC 81 123
AT2G06200.2 WRC 120 162
AT2G06200.3 WRC 9 51

Links

Other WRC family TFs
Other Arabidopsis thaliana TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AtGRF6 Arabidopsis lyrata fgenesh2_kg.3__2919__AT2G06200.1 I 1.000
Bostr.24399s0028 Boechera stricta Bostr.24399s0028 I 1.000
Cagra.0757s0005 Capsella grandiflora Cagra.0757s0005 I 0.930
Carubv10015887m.g Capsella rubella Carubv10015887m.g I 0.930
GRMZM5G893117 Zea mays GRMZM5G893117 I 0.923
Thhalv10002643m.g Eutrema salsugineum Thhalv10002643m.g I 0.881
GLYMA17G05800 Glycine max GLYMA17G05800 I 0.860
Cucsa.117300 Cucumis sativus Cucsa.117300 I 0.860
GLYMA09G07990 Glycine max GLYMA09G07990 I 0.860
cassava40748.m1 Manihot esculenta cassava40748.m1 I 0.860
GLYMA13G16924 Glycine max GLYMA13G16924 I 0.860
GLYMA15G19460 Glycine max GLYMA15G19460 I 0.860
29739.m003775 Ricinus communis 29739.m003775 I 0.860
POPTR_0018s07140 Populus trichocarpa POPTR_0018s07140 I 0.860
MTR_2g041430 Medicago truncatula MTR_2g041430 I 0.860
MTR_4g125490 Medicago truncatula MTR_4g125490 I 0.860
POPTR_0003s06360 Populus trichocarpa POPTR_0003s06360 I 0.860
TCM_037550 Theobroma cacao TCM_037550 I 0.860
VIT_09s0002g01350 Vitis vinifera VIT_09s0002g01350 I 0.860
Ciclev10008922m.g Citrus clementina Ciclev10008922m.g I 0.860
LjT10E17.120.nd Lotus japonicus LjT10E17.120.nd I 0.860
Cla017125 Citrullus lanatus Cla017125 I 0.860
Cla011348 Citrullus lanatus Cla011348 I 0.860
cassava39602.m1 Manihot esculenta cassava39602.m1 I 0.860
Cucsa.141640 Cucumis sativus Cucsa.141640 I 0.860
Bra015184 Brassica rapa Bra015184 I 0.860
Lus10000473.g Linum usitatissimum Lus10000473.g I 0.860
Lus10015651.g Linum usitatissimum Lus10015651.g I 0.860
Lus10033441.g Linum usitatissimum Lus10033441.g I 0.860
SapurV1A.0087s0080 Salix purpurea SapurV1A.0087s0080 I 0.860
Lus10037668.g Linum usitatissimum Lus10037668.g I 0.860
Gorai.009G035200 Gossypium raimondii Gorai.009G035200 I 0.860
orange1.1g023105m.g Citrus sinensis orange1.1g023105m.g I 0.860
evm.TU.supercontig_28.61 Carica papaya evm.TU.supercontig_28.61 I 0.860
Eucgr.C00823 Eucalyptus grandis Eucgr.C00823 I 0.860
Pavir.J14128 Panicum virgatum Pavir.J14128 I 0.837
POPTR_0006s14560 Populus trichocarpa POPTR_0006s14560 I 0.837
Sb04g034800 Sorghum bicolor Sb04g034800 I 0.837
PK28107.1 Cannabis sativa PK28107.1 I 0.837
Traes_6AL_F5BFFCA3E Triticum aestivum Traes_6AL_F5BFFCA3E I 0.837
SapurV1A.0616s0110 Salix purpurea SapurV1A.0616s0110 I 0.837
Solyc07g041640.2 Solanum lycopersicum Solyc07g041640.2 I 0.837
Si017511m.g Setaria italica Si017511m.g I 0.837
SapurV1A.0002s0920 Salix purpurea SapurV1A.0002s0920 I 0.837
SapurV1A.0177s0310 Salix purpurea SapurV1A.0177s0310 I 0.837
OPUNC02G31900 Oryza punctata OPUNC02G31900 I 0.837
ONIVA02G36590 Oryza nivara ONIVA02G36590 I 0.837
OMERI02G32800 Oryza meridionalis OMERI02G32800 I 0.837
ORGLA02G0298900 Oryza glaberrima ORGLA02G0298900 I 0.837
ORUFI02G36060 Oryza rufipogon ORUFI02G36060 I 0.837
PGSC0003DMG400013004 Solanum tuberosum PGSC0003DMG400013004 I 0.837
GRF1 Oryza sativa OS02G0776900 I 0.837
Traes_6DL_4C3F04219 Triticum aestivum Traes_6DL_4C3F04219 I 0.837
orange1.1g047108m.g Citrus sinensis orange1.1g047108m.g I 0.837
gene07429-v1.0-hybrid Fragaria vesca gene07429-v1.0-hybrid I 0.837
29706.m001283 Ricinus communis 29706.m001283 I 0.837
PK09793.1 Cannabis sativa PK09793.1 I 0.837
Aquca_076_00086 Aquilegia coerulea Aquca_076_00086 I 0.837
mgf020920m Mimulus guttatus mgf020920m I 0.837
Cucsa.192190 Cucumis sativus Cucsa.192190 I 0.837
OGLUM02G35690 Oryza glumaepatula OGLUM02G35690 I 0.837
Gorai.011G058800 Gossypium raimondii Gorai.011G058800 I 0.837
evm.TU.supercontig_25.118 Carica papaya evm.TU.supercontig_25.118 I 0.837
MDP0000243533 Malus domestica MDP0000243533 I 0.837
Ca_23149 Cicer arietinum Ca_23149 I 0.837
Ca_11607 Cicer arietinum Ca_11607 I 0.837
Ca_10012 Cicer arietinum Ca_10012 I 0.837
Ciclev10025855m.g Citrus clementina Ciclev10025855m.g I 0.837
Cla012781 Citrullus lanatus Cla012781 I 0.837
Pm013274 Prunus mume Pm013274 I 0.837
SapurV1A.3612s0010 Salix purpurea SapurV1A.3612s0010 I 0.837
gene12474-v1.0-hybrid Fragaria vesca gene12474-v1.0-hybrid I 0.837
PRUPE_ppa017593mg Prunus persica PRUPE_ppa017593mg I 0.837
GSMUA_Achr8G30640_001 Musa acuminata GSMUA_Achr8G30640_001 I 0.837
chr3.CM0127.490.nc Lotus japonicus chr3.CM0127.490.nc I 0.837
GRMZM2G105335 Zea mays GRMZM2G105335 I 0.837
LPERR02G28430 Leersia perrieri LPERR02G28430 I 0.837
MTR_0001s0490 Medicago truncatula MTR_0001s0490 I 0.837
OB02G41370 Oryza brachyantha OB02G41370 I 0.837
MTR_8g020560 Medicago truncatula MTR_8g020560 I 0.837
GLYMA16G00971 Glycine max GLYMA16G00971 I 0.837
GLYMA12G01730 Glycine max GLYMA12G01730 I 0.837
F775_24390 Aegilops tauschii F775_24390 I 0.837
BRADI3G57267 Brachypodium distachyon BRADI3G57267 I 0.837
GRF1 Oryza indica BGIOSGA005497 I 0.837
GLYMA01G44471 Glycine max GLYMA01G44471 I 0.837
GLYMA07G04290 Glycine max GLYMA07G04290 I 0.837
GLYMA11G11826 Glycine max GLYMA11G11826 I 0.837
GLYMA11G01060 Glycine max GLYMA11G01060 I 0.837
OBART02G34550 Oryza barthii OBART02G34550 I 0.837
LjT02E24.10.nc Lotus japonicus LjT02E24.10.nc I 0.837
Pm019573 Prunus mume Pm019573 I 0.814
OGLUM02G29770 Oryza glumaepatula OGLUM02G29770 I 0.814
GSMUA_Achr1G21940_001 Musa acuminata GSMUA_Achr1G21940_001 I 0.814
Cla006913 Citrullus lanatus Cla006913 I 0.814
Pm027054 Prunus mume Pm027054 I 0.814
GRMZM2G129147 Zea mays GRMZM2G129147 I 0.814
cassava14256.m1 Manihot esculenta cassava14256.m1 I 0.814
OPUNC04G21620 Oryza punctata OPUNC04G21620 I 0.814
30073.m002312 Ricinus communis 30073.m002312 I 0.814
orange1.1g020051m.g Citrus sinensis orange1.1g020051m.g I 0.814
VIT_16s0039g01450 Vitis vinifera VIT_16s0039g01450 I 0.814
TCM_025561 Theobroma cacao TCM_025561 I 0.814
Pavir.Ab02786 Panicum virgatum Pavir.Ab02786 I 0.814
Solyc08g075950.1 Solanum lycopersicum Solyc08g075950.1 I 0.814
TCM_029130 Theobroma cacao TCM_029130 I 0.814
LPERR02G23730 Leersia perrieri LPERR02G23730 I 0.814
VIT_11s0016g01250 Vitis vinifera VIT_11s0016g01250 I 0.814
BGIOSGA014417 Oryza indica BGIOSGA014417 I 0.814
Pavir.Aa00789 Panicum virgatum Pavir.Aa00789 I 0.814
cassava2802.m1 Manihot esculenta cassava2802.m1 I 0.814
MDP0000274400 Malus domestica MDP0000274400 I 0.814
Gorai.013G184200 Gossypium raimondii Gorai.013G184200 I 0.814
Gorai.013G225300 Gossypium raimondii Gorai.013G225300 I 0.814
OLONG_008372 Oryza longistaminata OLONG_008372 I 0.814
OLONG_003255 Oryza longistaminata OLONG_003255 I 0.814
Gorai.003G057700 Gossypium raimondii Gorai.003G057700 I 0.814
Eucgr.F04420 Eucalyptus grandis Eucgr.F04420 I 0.814
Ciclev10032065m.g Citrus clementina Ciclev10032065m.g I 0.814
gene12549-v1.0-hybrid Fragaria vesca gene12549-v1.0-hybrid I 0.814
Aquca_052_00053 Aquilegia coerulea Aquca_052_00053 I 0.814
Lus10009533.g Linum usitatissimum Lus10009533.g I 0.814
cassava41970.valid.m1 Manihot esculenta cassava41970.valid.m1 I 0.814
GRMZM2G041223 Zea mays GRMZM2G041223 I 0.814
cassava34867.m1 Manihot esculenta cassava34867.m1 I 0.814
Cucsa.017410 Cucumis sativus Cucsa.017410 I 0.814
GRMZM2G034876 Zea mays GRMZM2G034876 I 0.814
Lus10020352.g Linum usitatissimum Lus10020352.g I 0.814
OMERI02G28100 Oryza meridionalis OMERI02G28100 I 0.814
OMERI04G19930 Oryza meridionalis OMERI04G19930 I 0.814
OBART04G24070 Oryza barthii OBART04G24070 I 0.814
ONIVA02G31920 Oryza nivara ONIVA02G31920 I 0.814
POPTR_0001s16920 Populus trichocarpa POPTR_0001s16920 I 0.814
Pavir.J03212 Panicum virgatum Pavir.J03212 I 0.814
PGSC0003DMG400030881 Solanum tuberosum PGSC0003DMG400030881 I 0.814
LPERR04G19760 Leersia perrieri LPERR04G19760 I 0.814
POPTR_0013s07500 Populus trichocarpa POPTR_0013s07500 I 0.814
PRUPE_ppa022199mg Prunus persica PRUPE_ppa022199mg I 0.814
SapurV1A.0568s0060 Salix purpurea SapurV1A.0568s0060 I 0.814
PRUPE_ppa015791mg Prunus persica PRUPE_ppa015791mg I 0.814
OPUNC02G26750 Oryza punctata OPUNC02G26750 I 0.814
OGLUM04G24010 Oryza glumaepatula OGLUM04G24010 I 0.814
ORGLA04G0206400 Oryza glaberrima ORGLA04G0206400 I 0.814
OBART02G29160 Oryza barthii OBART02G29160 I 0.814
PDK_20s1344231g002 Phoenix dactylifera PDK_20s1344231g002 I 0.814
ORUFI02G30740 Oryza rufipogon ORUFI02G30740 I 0.814
ORUFI04G25800 Oryza rufipogon ORUFI04G25800 I 0.814
OS04G0600900 Oryza sativa OS04G0600900 I 0.814
OB04G31020 Oryza brachyantha OB04G31020 I 0.814
Sb04g030770 Sorghum bicolor Sb04g030770 I 0.814
ONIVA04G23220 Oryza nivara ONIVA04G23220 I 0.814
Si017449m.g Setaria italica Si017449m.g I 0.814
Sb06g027465 Sorghum bicolor Sb06g027465 I 0.814
BGIOSGA005785 Oryza indica BGIOSGA005785 I 0.814
GRMZM2G067743 Zea mays GRMZM2G067743 I 0.800
ORUFI06G01080 Oryza rufipogon ORUFI06G01080 I 0.791
Si008818m.g Setaria italica Si008818m.g I 0.791
LPERR06G01000 Leersia perrieri LPERR06G01000 I 0.791
OB06G11200 Oryza brachyantha OB06G11200 I 0.791
Si011853m.g Setaria italica Si011853m.g I 0.791
AMTR_s00024p00228870 Amborella trichopoda AMTR_s00024p00228870 I 0.791
OBART06G01070 Oryza barthii OBART06G01070 I 0.791
Traes_2AL_07B1977B8 Triticum aestivum Traes_2AL_07B1977B8 I 0.791
mgf002023m Mimulus guttatus mgf002023m I 0.791
AMTR_s00048p00216350 Amborella trichopoda AMTR_s00048p00216350 I 0.791
F775_19681 Aegilops tauschii F775_19681 I 0.791
BRADI3G52547 Brachypodium distachyon BRADI3G52547 I 0.791
OPUNC06G01050 Oryza punctata OPUNC06G01050 I 0.791
Solyc08g005430.2 Solanum lycopersicum Solyc08g005430.2 I 0.791
Solyc12g096070.1 Solanum lycopersicum Solyc12g096070.1 I 0.791
Traes_2DL_3B4943F11 Triticum aestivum Traes_2DL_3B4943F11 I 0.791
ORGLA06G0010200 Oryza glaberrima ORGLA06G0010200 I 0.791
BRADI1G50597 Brachypodium distachyon BRADI1G50597 I 0.791
OGLUM06G01060 Oryza glumaepatula OGLUM06G01060 I 0.791
PGSC0003DMG400018491 Solanum tuberosum PGSC0003DMG400018491 I 0.791
Pavir.Db02421 Panicum virgatum Pavir.Db02421 I 0.791
Pavir.Ga00724 Panicum virgatum Pavir.Ga00724 I 0.791
OMERI06G01060 Oryza meridionalis OMERI06G01060 I 0.791
GSMUA_Achr10G06370_001 Musa acuminata GSMUA_Achr10G06370_001 I 0.791
Pavir.Da02366 Panicum virgatum Pavir.Da02366 I 0.791
GSMUA_Achr2G04650_001 Musa acuminata GSMUA_Achr2G04650_001 I 0.791
GSMUA_Achr7G02330_001 Musa acuminata GSMUA_Achr7G02330_001 I 0.791
GSMUA_Achr1G23840_001 Musa acuminata GSMUA_Achr1G23840_001 I 0.791
BGIOSGA022056 Oryza indica BGIOSGA022056 I 0.791
GRMZM2G098594 Zea mays GRMZM2G098594 I 0.791
PGSC0003DMG400029384 Solanum tuberosum PGSC0003DMG400029384 I 0.791
Sb10g001350 Sorghum bicolor Sb10g001350 I 0.791
GSMUA_AchrUn_randomG04320_001 Musa acuminata GSMUA_AchrUn_randomG04320_001 I 0.791
ONIVA06G01450 Oryza nivara ONIVA06G01450 I 0.791
TRIUR3_01357 Triticum urartu TRIUR3_01357 I 0.791
Pavir.Gb00674 Panicum virgatum Pavir.Gb00674 I 0.791
BRADI5G20607 Brachypodium distachyon BRADI5G20607 I 0.791
Bo5g131870 Brassica oleracea Bo5g131870 I 0.767
orange1.1g028751m.g Citrus sinensis orange1.1g028751m.g I 0.767
Gorai.004G204600 Gossypium raimondii Gorai.004G204600 I 0.767
BGIOSGA022506 Oryza indica BGIOSGA022506 I 0.767
Gorai.008G241800 Gossypium raimondii Gorai.008G241800 I 0.767
Lus10000468.g Linum usitatissimum Lus10000468.g I 0.767
GRF5 Arabidopsis thaliana AT3G13960 I 0.767
30190.m011066 Ricinus communis 30190.m011066 I 0.767
MLOC_64055 Hordeum vulgare MLOC_64055 I 0.767
cassava30116.valid.m1 Manihot esculenta cassava30116.valid.m1 I 0.767
cassava41173.m1 Manihot esculenta cassava41173.m1 I 0.767
mgf026507m Mimulus guttatus mgf026507m I 0.767
Thhalv10020873m.g Eutrema salsugineum Thhalv10020873m.g I 0.767
POPTR_0019s05910 Populus trichocarpa POPTR_0019s05910 I 0.767
OMERI06G07610 Oryza meridionalis OMERI06G07610 I 0.767
TCM_016120 Theobroma cacao TCM_016120 I 0.767
Traes_6AL_EEA5F4238 Triticum aestivum Traes_6AL_EEA5F4238 I 0.767
TRIUR3_30418 Triticum urartu TRIUR3_30418 I 0.767
VIT_02s0025g04910 Vitis vinifera VIT_02s0025g04910 I 0.767
ORUFI06G06870 Oryza rufipogon ORUFI06G06870 I 0.767
GRF2 Oryza sativa OS06G0204800 I 0.767
F775_52301 Aegilops tauschii F775_52301 I 0.767
AtGRF5 Arabidopsis lyrata fgenesh2_kg.3__1504__AT3G13960.1 I 0.767
ORGLA06G0059900 Oryza glaberrima ORGLA06G0059900 I 0.767
OGLUM06G07010 Oryza glumaepatula OGLUM06G07010 I 0.767
F775_13620 Aegilops tauschii F775_13620 I 0.767
OPUNC06G06310 Oryza punctata OPUNC06G06310 I 0.767
OLONG_006788 Oryza longistaminata OLONG_006788 I 0.767
Carubv10013860m.g Capsella rubella Carubv10013860m.g I 0.767
Bostr.28625s0309 Boechera stricta Bostr.28625s0309 I 0.767
Cagra.0736s0034 Capsella grandiflora Cagra.0736s0034 I 0.767
evm.TU.supercontig_43.138 Carica papaya evm.TU.supercontig_43.138 I 0.750
POPTR_0001s01480 Populus trichocarpa POPTR_0001s01480 I 0.744
LPERR06G06090 Leersia perrieri LPERR06G06090 I 0.744
PRUPE_ppa011917mg Prunus persica PRUPE_ppa011917mg I 0.744
SapurV1A.0051s0520 Salix purpurea SapurV1A.0051s0520 I 0.744
SapurV1A.0063s0420 Salix purpurea SapurV1A.0063s0420 I 0.744
POPTR_0003s10000 Populus trichocarpa POPTR_0003s10000 I 0.744
Bo3g065850 Brassica oleracea Bo3g065850 I 0.744
BRADI1G46427 Brachypodium distachyon BRADI1G46427 I 0.744
Ciclev10022033m.g Citrus clementina Ciclev10022033m.g I 0.744
gene13517-v1.0-hybrid Fragaria vesca gene13517-v1.0-hybrid I 0.744
Eucgr.D02603 Eucalyptus grandis Eucgr.D02603 I 0.744
Bra027384 Brassica rapa Bra027384 I 0.744
Lus10004455.g Linum usitatissimum Lus10004455.g I 0.744
Pm023072 Prunus mume Pm023072 I 0.744
Bo1g134740 Brassica oleracea Bo1g134740 I 0.744
Bra001532 Brassica rapa Bra001532 I 0.744
Bra021521 Brassica rapa Bra021521 I 0.744
GSMUA_Achr6G01270_001 Musa acuminata GSMUA_Achr6G01270_001 I 0.744
SELMODRAFT_442384 Selaginella moellendorffii SELMODRAFT_442384 I 0.721
GSMUA_Achr5G20170_001 Musa acuminata GSMUA_Achr5G20170_001 I 0.721
GSMUA_Achr11G21590_001 Musa acuminata GSMUA_Achr11G21590_001 I 0.721
GRMZM5G850129 Zea mays GRMZM5G850129 I 0.721
AMTR_s00040p00189460 Amborella trichopoda AMTR_s00040p00189460 I 0.721
SELMODRAFT_442763 Selaginella moellendorffii SELMODRAFT_442763 I 0.721
29700.m000761 Ricinus communis 29700.m000761 I 0.721
Pavir.Da01847 Panicum virgatum Pavir.Da01847 I 0.721
MDP0000276970 Malus domestica MDP0000276970 I 0.721
Lus10008916.g Linum usitatissimum Lus10008916.g I 0.721
Aquca_013_00537 Aquilegia coerulea Aquca_013_00537 I 0.721
SapurV1A.0326s0130 Salix purpurea SapurV1A.0326s0130 I 0.721