AT2G42040 (Arabidopsis thaliana)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF08879 (WRC) IPR014977 AT2G42040 T350686_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and, together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G42040
M01088_2.00
Arabidopsis thaliana
NBTRCACYNN

NNRGTGYAVN
PBM
Sullivan et al.(2014)
pTH7503
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01088_2.00 WRC 52 93

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G42040.1 WRC 164 205

Links

Other WRC family TFs
Other Arabidopsis thaliana TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I 1.000
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I 1.000
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I 0.976
Carubv10023878m.g Capsella rubella Carubv10023878m.g I 0.976
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I 0.976
Bra000251 Brassica rapa Bra000251 I 0.953
Bo3g035920 Brassica oleracea Bo3g035920 I 0.953
Bra016897 Brassica rapa Bra016897 I 0.952
Bo4g014690 Brassica oleracea Bo4g014690 I 0.930
Bo4g191280 Brassica oleracea Bo4g191280 I 0.929
Bra004667 Brassica rapa Bra004667 I 0.929
Cucsa.242590 Cucumis sativus Cucsa.242590 I 0.905
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I 0.905
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I 0.905
POPTR_0016s05840 Populus trichocarpa POPTR_0016s05840 I 0.884
Ciclev10012160m.g Citrus clementina Ciclev10012160m.g I 0.884
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I 0.884
MDP0000154434 Malus domestica MDP0000154434 I 0.884
POPTR_0016s05850 Populus trichocarpa POPTR_0016s05850 I 0.884
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I 0.884
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I 0.884
PK26699.1 Cannabis sativa PK26699.1 I 0.881
VIT_08s0007g06640 Vitis vinifera VIT_08s0007g06640 I 0.860
Pm025936 Prunus mume Pm025936 I 0.860
Ca_07320 Cicer arietinum Ca_07320 I 0.860
TCM_024932 Theobroma cacao TCM_024932 I 0.860
29613.m000377 Ricinus communis 29613.m000377 I 0.860
PRUPE_ppa016277mg Prunus persica PRUPE_ppa016277mg I 0.860
GLYMA09G16841 Glycine max GLYMA09G16841 I 0.860
POPTR_0006s20790 Populus trichocarpa POPTR_0006s20790 I 0.860
cassava36464.valid.m1 Manihot esculenta cassava36464.valid.m1 I 0.860
Gorai.012G100300 Gossypium raimondii Gorai.012G100300 I 0.860
MDP0000121493 Malus domestica MDP0000121493 I 0.860
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I 0.860
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I 0.860
evm.TU.supercontig_85.54 Carica papaya evm.TU.supercontig_85.54 I 0.860
cassava31648.valid.m1 Manihot esculenta cassava31648.valid.m1 I 0.860
cassava36463.valid.m1 Manihot esculenta cassava36463.valid.m1 I 0.860
Eucgr.A02456 Eucalyptus grandis Eucgr.A02456 I 0.860
29613.m000379 Ricinus communis 29613.m000379 I 0.860
GLYMA03G30170 Glycine max GLYMA03G30170 I 0.860
GSMUA_Achr10G29530_001 Musa acuminata GSMUA_Achr10G29530_001 I 0.860
GSMUA_Achr7G18600_001 Musa acuminata GSMUA_Achr7G18600_001 I 0.860
GLYMA19G33070 Glycine max GLYMA19G33070 I 0.860
MTR_1g054175 Medicago truncatula MTR_1g054175 I 0.860
MTR_7g093360 Medicago truncatula MTR_7g093360 I 0.860
GSMUA_Achr9G15730_001 Musa acuminata GSMUA_Achr9G15730_001 I 0.860
MTR_7g093350 Medicago truncatula MTR_7g093350 I 0.860
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I 0.857
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I 0.857
PDK_20s1436981g002 Phoenix dactylifera PDK_20s1436981g002 I 0.857
GSMUA_Achr3G20210_001 Musa acuminata GSMUA_Achr3G20210_001 I 0.837
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I 0.837
LjT35F01.80.nd Lotus japonicus LjT35F01.80.nd I 0.837
SapurV1A.0251s0220 Salix purpurea SapurV1A.0251s0220 I 0.837
SapurV1A.3188s0010 Salix purpurea SapurV1A.3188s0010 I 0.837
GLYMA02G28962 Glycine max GLYMA02G28962 I 0.837
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I 0.814
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I 0.810
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I 0.810
LPERR02G28190 Leersia perrieri LPERR02G28190 I 0.810
Pavir.J25248 Panicum virgatum Pavir.J25248 I 0.810
OPUNC02G31650 Oryza punctata OPUNC02G31650 I 0.810
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I 0.810
BGIOSGA005516 Oryza indica BGIOSGA005516 I 0.810
OS02G0773600 Oryza sativa OS02G0773600 I 0.810
Sb10g006810 Sorghum bicolor Sb10g006810 I 0.810
ONIVA02G36360 Oryza nivara ONIVA02G36360 I 0.810
OBART06G06800 Oryza barthii OBART06G06800 I 0.810
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I 0.810
OMERI02G32570 Oryza meridionalis OMERI02G32570 I 0.810
Pavir.J23833 Panicum virgatum Pavir.J23833 I 0.810
F775_01928 Aegilops tauschii F775_01928 I 0.792
Aquca_014_00855 Aquilegia coerulea Aquca_014_00855 I 0.791
OB06G16230 Oryza brachyantha OB06G16230 I 0.786
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I 0.786
LPERR06G06210 Leersia perrieri LPERR06G06210 I 0.786
ONIVA06G08110 Oryza nivara ONIVA06G08110 I 0.786
OPUNC06G06450 Oryza punctata OPUNC06G06450 I 0.786
BGIOSGA022518 Oryza indica BGIOSGA022518 I 0.786
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I 0.786
OS06G0207600 Oryza sativa OS06G0207600 I 0.786
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I 0.786
GRMZM2G033915 Zea mays GRMZM2G033915 I 0.786
OMERI06G07980 Oryza meridionalis OMERI06G07980 I 0.780
mgf007626m Mimulus guttatus mgf007626m I 0.767
MLOC_17575 Hordeum vulgare MLOC_17575 I 0.767
Lus10021062.g Linum usitatissimum Lus10021062.g I 0.762
Lus10004164.g Linum usitatissimum Lus10004164.g I 0.756
AMTR_s00024p00159910 Amborella trichopoda AMTR_s00024p00159910 I 0.738
GRMZM2G165991 Zea mays GRMZM2G165991 I 0.732