POPTR_0016s05850 (Populus trichocarpa)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF08879 (WRC) IPR014977 POPTR_0016s05850 T351210_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G42040
M01088_2.00
Arabidopsis thaliana
NBTRCACYNN

NNRGTGYAVN
PBM
Sullivan et al.(2014)
pTH7503
0.884 0.884
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s05850.1 WRC 212 254

Links

Other WRC family TFs
Other Populus trichocarpa TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I 1.000
Ciclev10012160m.g Citrus clementina Ciclev10012160m.g I 0.977
MDP0000154434 Malus domestica MDP0000154434 I 0.977
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I 0.977
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I 0.977
POPTR_0016s05840 Populus trichocarpa POPTR_0016s05840 I 0.977
Gorai.012G100300 Gossypium raimondii Gorai.012G100300 I 0.953
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I 0.953
evm.TU.supercontig_85.54 Carica papaya evm.TU.supercontig_85.54 I 0.953
Eucgr.A02456 Eucalyptus grandis Eucgr.A02456 I 0.953
MDP0000121493 Malus domestica MDP0000121493 I 0.953
cassava36463.valid.m1 Manihot esculenta cassava36463.valid.m1 I 0.953
MTR_7g093360 Medicago truncatula MTR_7g093360 I 0.953
Cucsa.242590 Cucumis sativus Cucsa.242590 I 0.953
cassava36464.valid.m1 Manihot esculenta cassava36464.valid.m1 I 0.953
cassava31648.valid.m1 Manihot esculenta cassava31648.valid.m1 I 0.953
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I 0.953
TCM_024932 Theobroma cacao TCM_024932 I 0.953
VIT_08s0007g06640 Vitis vinifera VIT_08s0007g06640 I 0.953
Ca_07320 Cicer arietinum Ca_07320 I 0.953
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I 0.953
PRUPE_ppa016277mg Prunus persica PRUPE_ppa016277mg I 0.953
29613.m000379 Ricinus communis 29613.m000379 I 0.953
POPTR_0006s20790 Populus trichocarpa POPTR_0006s20790 I 0.953
MTR_7g093350 Medicago truncatula MTR_7g093350 I 0.953
Pm025936 Prunus mume Pm025936 I 0.953
SapurV1A.0251s0220 Salix purpurea SapurV1A.0251s0220 I 0.953
GSMUA_Achr10G29530_001 Musa acuminata GSMUA_Achr10G29530_001 I 0.953
GSMUA_Achr7G18600_001 Musa acuminata GSMUA_Achr7G18600_001 I 0.953
PK26699.1 Cannabis sativa PK26699.1 I 0.953
GLYMA19G33070 Glycine max GLYMA19G33070 I 0.953
GLYMA03G30170 Glycine max GLYMA03G30170 I 0.953
MTR_1g054175 Medicago truncatula MTR_1g054175 I 0.953
GSMUA_Achr9G15730_001 Musa acuminata GSMUA_Achr9G15730_001 I 0.953
GLYMA09G16841 Glycine max GLYMA09G16841 I 0.953
SapurV1A.3188s0010 Salix purpurea SapurV1A.3188s0010 I 0.953
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I 0.953
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I 0.930
GLYMA02G28962 Glycine max GLYMA02G28962 I 0.930
LjT35F01.80.nd Lotus japonicus LjT35F01.80.nd I 0.930
29613.m000377 Ricinus communis 29613.m000377 I 0.930
GSMUA_Achr3G20210_001 Musa acuminata GSMUA_Achr3G20210_001 I 0.930
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I 0.930
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I 0.930
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I 0.907
PDK_20s1436981g002 Phoenix dactylifera PDK_20s1436981g002 I 0.884
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I 0.884
AT2G42040 Arabidopsis thaliana AT2G42040 D 0.884
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I 0.884
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I 0.860
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I 0.860
Bo3g035920 Brassica oleracea Bo3g035920 I 0.860
Carubv10023878m.g Capsella rubella Carubv10023878m.g I 0.860
Bra000251 Brassica rapa Bra000251 I 0.860
Bo4g014690 Brassica oleracea Bo4g014690 I 0.837
Bra016897 Brassica rapa Bra016897 I 0.837
Pavir.J25248 Panicum virgatum Pavir.J25248 I 0.814
Pavir.J23833 Panicum virgatum Pavir.J23833 I 0.814
Sb10g006810 Sorghum bicolor Sb10g006810 I 0.814
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I 0.814
Bo4g191280 Brassica oleracea Bo4g191280 I 0.814
Bra004667 Brassica rapa Bra004667 I 0.814
F775_01928 Aegilops tauschii F775_01928 I 0.792
Aquca_014_00855 Aquilegia coerulea Aquca_014_00855 I 0.791
OS02G0773600 Oryza sativa OS02G0773600 I 0.791
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I 0.791
OMERI02G32570 Oryza meridionalis OMERI02G32570 I 0.791
OBART06G06800 Oryza barthii OBART06G06800 I 0.791
LPERR02G28190 Leersia perrieri LPERR02G28190 I 0.791
GRMZM2G033915 Zea mays GRMZM2G033915 I 0.791
OPUNC02G31650 Oryza punctata OPUNC02G31650 I 0.791
ONIVA02G36360 Oryza nivara ONIVA02G36360 I 0.791
BGIOSGA005516 Oryza indica BGIOSGA005516 I 0.791
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I 0.791
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I 0.791
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I 0.786
OS06G0207600 Oryza sativa OS06G0207600 I 0.786
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I 0.786
BGIOSGA022518 Oryza indica BGIOSGA022518 I 0.786
ONIVA06G08110 Oryza nivara ONIVA06G08110 I 0.786
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I 0.786
LPERR06G06210 Leersia perrieri LPERR06G06210 I 0.767
OB06G16230 Oryza brachyantha OB06G16230 I 0.767
mgf007626m Mimulus guttatus mgf007626m I 0.767
OPUNC06G06450 Oryza punctata OPUNC06G06450 I 0.767
MLOC_17575 Hordeum vulgare MLOC_17575 I 0.767
OMERI06G07980 Oryza meridionalis OMERI06G07980 I 0.744
AMTR_s00024p00159910 Amborella trichopoda AMTR_s00024p00159910 I 0.721