CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava28657.m1
(
Manihot esculenta
)
WRC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF08879 (WRC)
IPR014977
cassava28657.m1
T351442_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GRF9
M07370_2.00
Arabidopsis thaliana
NTGTCAGANNHNNVH
DBNNDNNTCTGACAN
Dap-seq
OMalley et al.(2016)
GRF9_col_a
0.706
0.706
GRF9
M07371_2.00
Arabidopsis thaliana
TGTCAGAN
NTCTGACA
Dap-seq
OMalley et al.(2016)
GRF9_colamp_a
0.706
0.706
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava28657.m1
WRC
101
143
PEPGRCRRTDGKKWRCKKNVVSGHKYCEQHMHRGRKRSRKPVE
cassava28657.m1
WRC
306
347
VEPGRCRRTDGKKWRCRRDVVPGEKYCKIHMHRGAKKPMEAS
Links
Other
WRC
family TFs
Other
Manihot esculenta
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy