Pavir.Db02048 (Panicum virgatum)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 Pavir.Db02048 T351724_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AtGRF6
M02545_2.00
Arabidopsis thaliana
NNNNYDNN

NNHRNNNN
PBM
Weirauch et al.(2014)
pTH7356
0.733 0.733
AtGRF6
M07369_2.00
Arabidopsis thaliana
NNNNNHNTGTCAGA

TCTGACANDNNNNN
Dap-seq
OMalley et al.(2016)
AtGRF6_col_a
0.733 0.733
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Db02048.1.p WRC 86 100

Links

Other WRC family TFs
Other Panicum virgatum TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_32835 Aegilops tauschii F775_32835 N 0.800
F775_13620 Aegilops tauschii F775_13620 I 0.800
AMTR_s00065p00092420 Amborella trichopoda AMTR_s00065p00092420 N 0.800
Aquca_013_00537 Aquilegia coerulea Aquca_013_00537 I 0.800
Aquca_006_00049 Aquilegia coerulea Aquca_006_00049 N 0.800
Aquca_037_00140 Aquilegia coerulea Aquca_037_00140 N 0.800
AtGRF5 Arabidopsis lyrata fgenesh2_kg.3__1504__AT3G13960.1 I 0.800
GRF5 Arabidopsis thaliana AT3G13960 I 0.800
Bostr.28625s0309 Boechera stricta Bostr.28625s0309 I 0.800
BRADI3G51685 Brachypodium distachyon BRADI3G51685 N 0.800
BRADI2G14320 Brachypodium distachyon BRADI2G14320 N 0.733
BRADI1G12650 Brachypodium distachyon BRADI1G12650 N 0.800
Bo4g122960 Brassica oleracea Bo4g122960 N 0.733
PK18842.1 Cannabis sativa PK18842.1 N 0.800
Cagra.0736s0034 Capsella grandiflora Cagra.0736s0034 I 0.800
Carubv10013860m.g Capsella rubella Carubv10013860m.g I 0.800
Cla022992 Citrullus lanatus Cla022992 N 0.800
Ciclev10019828m.g Citrus clementina Ciclev10019828m.g N 0.733
orange1.1g010979m.g Citrus sinensis orange1.1g010979m.g N 0.733
Cucsa.395430 Cucumis sativus Cucsa.395430 N 0.800
Eucgr.F00097 Eucalyptus grandis Eucgr.F00097 N 0.800
Thhalv10020873m.g Eutrema salsugineum Thhalv10020873m.g I 0.800
gene13517-v1.0-hybrid Fragaria vesca gene13517-v1.0-hybrid I 0.800
GLYMA10G07790 Glycine max GLYMA10G07790 N 0.800
Gorai.004G204600 Gossypium raimondii Gorai.004G204600 I 0.800
Gorai.009G222200 Gossypium raimondii Gorai.009G222200 N 0.800
Gorai.009G277500 Gossypium raimondii Gorai.009G277500 N 0.800
Gorai.010G027700 Gossypium raimondii Gorai.010G027700 N 0.800
Gorai.005G098700 Gossypium raimondii Gorai.005G098700 N 0.800
MLOC_80060 Hordeum vulgare MLOC_80060 N 0.800
MLOC_64055 Hordeum vulgare MLOC_64055 I 0.800
LPERR06G06090 Leersia perrieri LPERR06G06090 I 0.800
LjSGA_066892.1 Lotus japonicus LjSGA_066892.1 N 0.800
cassava22415.valid.m1 Manihot esculenta cassava22415.valid.m1 N 0.800
MTR_8g035640 Medicago truncatula MTR_8g035640 N 0.800
mgf026507m Mimulus guttatus mgf026507m I 0.800
mgf005583m Mimulus guttatus mgf005583m I 0.800
mgf002023m Mimulus guttatus mgf002023m I 0.800
GSMUA_Achr6G01270_001 Musa acuminata GSMUA_Achr6G01270_001 I 0.800
GSMUA_Achr10G06370_001 Musa acuminata GSMUA_Achr10G06370_001 I 0.800
GSMUA_Achr8G30640_001 Musa acuminata GSMUA_Achr8G30640_001 I 0.800
GSMUA_Achr2G04650_001 Musa acuminata GSMUA_Achr2G04650_001 I 0.800
ORGLA06G0059900 Oryza glaberrima ORGLA06G0059900 I 0.800
OGLUM06G07010 Oryza glumaepatula OGLUM06G07010 I 0.800
BGIOSGA022506 Oryza indica BGIOSGA022506 I 0.800
OMERI06G07610 Oryza meridionalis OMERI06G07610 I 0.800
OPUNC06G06310 Oryza punctata OPUNC06G06310 I 0.800
ORUFI06G06870 Oryza rufipogon ORUFI06G06870 I 0.800
GRF2 Oryza sativa OS06G0204800 I 0.800
POPTR_0014s01320 Populus trichocarpa POPTR_0014s01320 N 0.800
POPTR_0002s11590 Populus trichocarpa POPTR_0002s11590 N 0.800
POPTR_0007s14720 Populus trichocarpa POPTR_0007s14720 N 0.733
Pm023072 Prunus mume Pm023072 I 0.800
PRUPE_ppa011917mg Prunus persica PRUPE_ppa011917mg I 0.800
28976.m000158 Ricinus communis 28976.m000158 N 0.800
SapurV1A.0608s0150 Salix purpurea SapurV1A.0608s0150 N 0.733
SapurV1A.0177s0310 Salix purpurea SapurV1A.0177s0310 I 0.800
Solyc02g092070.2 Solanum lycopersicum Solyc02g092070.2 N 0.800
Solyc04g077510.2 Solanum lycopersicum Solyc04g077510.2 N 0.800
Solyc08g005430.2 Solanum lycopersicum Solyc08g005430.2 I 0.800
Solyc10g083510.1 Solanum lycopersicum Solyc10g083510.1 N 0.800
PGSC0003DMG400028259 Solanum tuberosum PGSC0003DMG400028259 N 0.800
PGSC0003DMG400021403 Solanum tuberosum PGSC0003DMG400021403 N 0.800
PGSC0003DMG400004942 Solanum tuberosum PGSC0003DMG400004942 N 0.800
PGSC0003DMG400018491 Solanum tuberosum PGSC0003DMG400018491 I 0.800
TCM_034655 Theobroma cacao TCM_034655 N 0.800
Traes_4AL_A8CBB811B Triticum aestivum Traes_4AL_A8CBB811B N 0.800
Traes_4BS_AAE1439D4 Triticum aestivum Traes_4BS_AAE1439D4 N 0.800
Traes_4DS_261E93270 Triticum aestivum Traes_4DS_261E93270 N 0.800
Traes_6BL_7462E6F9B Triticum aestivum Traes_6BL_7462E6F9B I 0.800
TRIUR3_30418 Triticum urartu TRIUR3_30418 I 0.800
TRIUR3_34986 Triticum urartu TRIUR3_34986 N 0.800
VIT_08s0007g03760 Vitis vinifera VIT_08s0007g03760 N 0.800
AtGRF7 Vitis vinifera VIT_16s0098g01080 N 0.800
VIT_18s0001g08650 Vitis vinifera VIT_18s0001g08650 N 0.800
GRMZM5G893117 Zea mays GRMZM5G893117 I 0.923