Thhalv10001460m.g (Eutrema salsugineum)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 Thhalv10001460m.g T351783_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GRF9
M07370_2.00
Arabidopsis thaliana
NTGTCAGANNHNNVH

DBNNDNNTCTGACAN
Dap-seq
OMalley et al.(2016)
GRF9_col_a
0.918 0.918
GRF9
M07371_2.00
Arabidopsis thaliana
TGTCAGAN

NTCTGACA
Dap-seq
OMalley et al.(2016)
GRF9_colamp_a
0.918 0.918
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10001460m WRC 84 126
Thhalv10001460m WRC 307 348

Links

Other WRC family TFs
Other Eutrema salsugineum TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10023501m.g Capsella rubella Carubv10023501m.g I 0.941
Cagra.0698s0014 Capsella grandiflora Cagra.0698s0014 I 0.941
Bostr.25993s0227 Boechera stricta Bostr.25993s0227 I 0.941
AtGRF9 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002259 I 0.929
GRF9 Arabidopsis thaliana AT2G45480 D 0.918
Bo4g195580 Brassica oleracea Bo4g195580 I 0.894
Bra039334 Brassica rapa Bra039334 I 0.882
PK07653.1 Cannabis sativa PK07653.1 I 0.741
AtGRF9 Vitis vinifera VIT_15s0048g01740 I 0.729
Ca_19588 Cicer arietinum Ca_19588 I 0.729
TCM_005483 Theobroma cacao TCM_005483 I 0.718
Cla021612 Citrullus lanatus Cla021612 N 0.709
MTR_8g035910 Medicago truncatula MTR_8g035910 N 0.706
SapurV1A.0532s0070 Salix purpurea SapurV1A.0532s0070 N 0.706
POPTR_0014s06750 Populus trichocarpa POPTR_0014s06750 I 0.706
Cucsa.257800 Cucumis sativus Cucsa.257800 N 0.706