Al_scaffold_0002_1233 (Arabidopsis lyrata)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03106 (WRKY) IPR003657 Al_scaffold_0002_1233 T351846_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.866 0.831
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.850 0.644
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.842 0.644
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0002_1233 WRKY 102 162

Links

Other WRKY family TFs
Other Arabidopsis lyrata TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY64 Arabidopsis thaliana AT1G66560 I 0.875
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.874
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.874
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.873
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.872
WRKY67 Arabidopsis thaliana AT1G66550 I 0.870
WRKY66 Arabidopsis thaliana AT1G80590 I 0.869
WRKY63 Arabidopsis thaliana AT1G66600 D 0.866
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.864
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.859
Bra008459 Brassica rapa Bra008459 I 0.858
Bo2g095820 Brassica oleracea Bo2g095820 I 0.858
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.858
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.856
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.854
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.854
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.853
Bra008454 Brassica rapa Bra008454 I 0.852
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.852
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.852
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.851
WRKY38 Arabidopsis thaliana AT5G22570 D 0.850
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.850
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.849
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.847
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.846
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.846
Bra028918 Brassica rapa Bra028918 I 0.846
Bra020196 Brassica rapa Bra020196 I 0.844
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.842
WRKY62 Arabidopsis thaliana AT5G01900 D 0.842
Bo2g024040 Brassica oleracea Bo2g024040 I 0.841
Bo5g068250 Brassica oleracea Bo5g068250 I 0.841
Bra023211 Brassica rapa Bra023211 I 0.841
Bra020197 Brassica rapa Bra020197 I 0.841
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.837
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.836
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.835
Bra008456 Brassica rapa Bra008456 I 0.835
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I 0.834
Carubv10002472m.g Capsella rubella Carubv10002472m.g I 0.834
Bo01002s040 Brassica oleracea Bo01002s040 I 0.829
Bra002421 Brassica rapa Bra002421 I 0.829
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I 0.826
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.823
OLONG_002978 Oryza longistaminata OLONG_002978 I 0.821
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.821
ONIVA09G03360 Oryza nivara ONIVA09G03360 I 0.819
Ca_18932 Cicer arietinum Ca_18932 I 0.819
BGIOSGA030113 Oryza indica BGIOSGA030113 I 0.819
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.816
OB05G17240 Oryza brachyantha OB05G17240 I 0.816
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I 0.814
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.813
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.813
OS05G0478800 Oryza sativa OS05G0478800 I 0.813
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.813
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.813
Si012735m.g Setaria italica Si012735m.g I 0.813
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.812
ORGLA09G0026100 Oryza glaberrima ORGLA09G0026100 I 0.812
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.811
LPERR05G06630 Leersia perrieri LPERR05G06630 I 0.811
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I 0.811
MDP0000828055 Malus domestica MDP0000828055 I 0.810
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.810
TCM_045555 Theobroma cacao TCM_045555 I 0.810
MTR_2g075750 Medicago truncatula MTR_2g075750 I 0.810
MTR_2g075610 Medicago truncatula MTR_2g075610 I 0.810
MLOC_22356 Hordeum vulgare MLOC_22356 I 0.809
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.809
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.809
TRIUR3_33054 Triticum urartu TRIUR3_33054 I 0.809
Traes_3DS_9A02CF31D Triticum aestivum Traes_3DS_9A02CF31D I 0.809
evm.TU.supercontig_86.64 Carica papaya evm.TU.supercontig_86.64 I 0.809
LPERR11G00960 Leersia perrieri LPERR11G00960 I 0.808
OB05G27830 Oryza brachyantha OB05G27830 I 0.808
WRKY55 Vitis vinifera VIT_13s0067g03130 I 0.808