CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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WRKY20
(
Arabidopsis thaliana
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
AT4G26640
T351942_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY20
M07414_2.00
Arabidopsis thaliana
HHHRGTCAAMGNH
DNCKTTGACYDDD
Dap-seq
OMalley et al.(2016)
WRKY20_col_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q40090_IPOBA
M11466_2.00
Ipomoea batatas
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPF1_Q2
0.864
0.835
WRKY3
M07381_2.00
Arabidopsis thaliana
MAWAGTCAAMR
YKTTGACTWTK
Dap-seq
OMalley et al.(2016)
WRKY3_col_a
0.862
0.809
WRKY33
M02554_2.00
Arabidopsis thaliana
NNRGTCHDNN
NNHDGACYNN
PBM
Weirauch et al.(2014)
pTH8183
0.858
0.817
WRKY33
M07391_2.00
Arabidopsis thaliana
HWWAGTCAAMD
HKTTGACTWWD
Dap-seq
OMalley et al.(2016)
WRKY33_col_a
0.858
0.817
WRKY2
M02567_2.00
Arabidopsis thaliana
BRGTCAAM
KTTGACYV
PBM
Weirauch et al.(2014)
pTH8832
0.858
0.826
PK05432.1
M01324_2.00
Cannabis sativa
NNRGTCARH
DYTGACYNN
PBM
Lambert et al.(2019)
pTH11342
0.858
0.835
WRKY26
M07418_2.00
Arabidopsis thaliana
MWAAGTCAACGNH
DNCGTTGACTWWK
Dap-seq
OMalley et al.(2016)
WRKY26_col_a
0.858
0.774
WRKY26
M07419_2.00
Arabidopsis thaliana
HMWAGTCAAMR
YKTTGACTWKD
Dap-seq
OMalley et al.(2016)
WRKY26_colamp_a
0.858
0.774
WRKY25
M02552_2.00
Arabidopsis thaliana
YRGTCAAM
KTTGACYR
PBM
Weirauch et al.(2014)
pTH8810
0.842
0.696
WRKY25
M07387_2.00
Arabidopsis thaliana
HWWRGTCAAMR
YKTTGACYWWD
Dap-seq
OMalley et al.(2016)
WRKY25_col_a
0.842
0.696
WRKY25
M07388_2.00
Arabidopsis thaliana
NNNHWRGTCAACRNH
DNYGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY25_colamp_a
0.842
0.696
ZAP1
M02726_2.00
Arabidopsis thaliana
DRCKCGGTCAA
TTGACCGMGYH
SELEX
Mathelier et al.(2014)
MA0589.1
0.841
0.722
ZAP1
M11463_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_01
0.841
0.722
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G26640.1
WRKY
139
195
DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHP
AT4G26640.1
WRKY
309
366
DDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHD
AT4G26640.2
WRKY
211
267
DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHP
AT4G26640.2
WRKY
381
438
DDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHD
AT4G26640.3
WRKY
35
91
DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHP
AT4G26640.3
WRKY
205
262
DDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHD
AT4G26640.4
WRKY
35
91
DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHP
AT4G26640.4
WRKY
205
262
DDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHD
AT4G26640.5
WRKY
35
91
DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHP
AT4G26640.5
WRKY
205
262
DDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHD
AT4G26640.6
WRKY
35
91
DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHP
AT4G26640.6
WRKY
205
262
DDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHD
AT4G26640.7
WRKY
171
227
DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHP
AT4G26640.7
WRKY
341
398
DDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHD
Links
Other
WRKY
family TFs
Other
Arabidopsis thaliana
TFs
786 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy