CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo2g057610
(
Brassica oleracea
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
Bo2g057610
T352091_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY6
M07377_2.00
Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG
CGTTGACYNDNDHNDNNNH
Dap-seq
OMalley et al.(2016)
WRKY6_col_a
0.871
0.881
WRKY6
M07378_2.00
Arabidopsis thaliana
NNHNWRGTCAACKNH
DNMGTTGACYWNDNN
Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a
0.871
0.881
WRKY31
M07408_2.00
Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG
CGTTGACYHNNNNNDNNNN
Dap-seq
OMalley et al.(2016)
WRKY31_col_a
0.869
0.881
WRKY31
M07409_2.00
Arabidopsis thaliana
NHWRGTCAACKNH
DNMGTTGACYWDN
Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a
0.869
0.881
WRKY42
M07404_2.00
Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN
NNDNNHNNNNHGTTGACYWHN
Dap-seq
OMalley et al.(2016)
WRKY42_col_a
0.867
0.864
WRKY42
M07405_2.00
Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD
HHNDNMGTTGACYWNNNHND
Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a
0.867
0.864
WRKY47
M00732_2.00
Arabidopsis thaliana
NNRGTCAACKN
NMGTTGACYNN
PBM
Chang et al.(2013)
pTH7913
0.865
0.864
WRKY47
M07402_2.00
Arabidopsis thaliana
WRGTCAAMGNHVDK
MHBDNCKTTGACYW
Dap-seq
OMalley et al.(2016)
WRKY47_col_a
0.865
0.864
WRKY47
M07403_2.00
Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN
NNNNDNMGTTGACYWDNNN
Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a
0.865
0.864
WRKY40
M02548_2.00
Arabidopsis thaliana
NRGTCAWN
NWTGACYN
PBM
Weirauch et al.(2014)
pTH8398
0.816
0.627
WRKY40
M07379_2.00
Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN
Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a
0.816
0.627
WRKY40
M07380_2.00
Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN
Dap-seq
OMalley et al.(2016)
WRKY40_col
0.816
0.627
WRKY40
M08180_2.00
Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN
ChIP-seq
Mathelier et al.(2014)
MA1085.2
0.816
0.627
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN
NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
0.813
0.644
WRKY21
M02553_2.00
Arabidopsis thaliana
NNRGTCAAMN
NKTTGACYNN
PBM
Weirauch et al.(2014)
pTH7422
0.810
0.610
WRKY21
M07389_2.00
Arabidopsis thaliana
HAAAGTCAACNNH
DNNGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_colamp_a
0.810
0.610
WRKY21
M07390_2.00
Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_col
0.810
0.610
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo2g057610.1
WRKY
207
265
NDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGKHNHP
Links
Other
WRKY
family TFs
Other
Brassica oleracea
TFs
792 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy