CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g180960
(
Brassica oleracea
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
Bo3g180960
T352130_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY12
M00898_2.00
Arabidopsis thaliana
NHGGTCAACNN
NNGTTGACCDN
PBM
Franco-Zorrilla et al.(2014)
WRKY12
0.810
0.534
WRKY75
M02562_2.00
Arabidopsis thaliana
NRGTCAAM
KTTGACYN
PBM
Weirauch et al.(2014)
pTH8821
0.809
0.586
WRKY75
M07420_2.00
Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY75_col_a
0.809
0.586
WRKY75
M07421_2.00
Arabidopsis thaliana
VAAAGTCAACRNH
DNYGTTGACTTTB
Dap-seq
OMalley et al.(2016)
WRKY75_colamp_a
0.809
0.586
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g180960.1
WRKY
184
241
DDGFRWRKYGQKVVTGNANPRSDYRCTYTGCEVKKLVEKSVDNVKLVVATYDGIHEHV
Links
Other
WRKY
family TFs
Other
Brassica oleracea
TFs
128 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy