CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra020196
(
Brassica rapa
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
Bra020196
T352298_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY38
M00901_2.00
Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN
PBM
Franco-Zorrilla et al.(2014)
WRKY38
0.862
0.847
WRKY62
M02561_2.00
Arabidopsis thaliana
TRGTCAAM
KTTGACYA
PBM
Weirauch et al.(2014)
pTH8246
0.837
0.661
WRKY63
M02546_2.00
Arabidopsis thaliana
NGGTCAAN
NTTGACCN
PBM
Weirauch et al.(2014)
pTH8182
0.834
0.661
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra020196.1-P
WRKY
109
169
YDGFLWRKYGQKTIKQSKHQRSYYRCSYNIDYACGAKKHEQKIKDNPPVYRTTYFGHHTCR
Links
Other
WRKY
family TFs
Other
Brassica rapa
TFs
86 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra020197
Brassica rapa
Bra020197
I
0.889
Bo2g024040
Brassica oleracea
Bo2g024040
I
0.889
Carubv10002472m.g
Capsella rubella
Carubv10002472m.g
I
0.869
Cagra.8153s0001
Capsella grandiflora
Cagra.8153s0001
I
0.869
Thhalv10015295m.g
Eutrema salsugineum
Thhalv10015295m.g
I
0.869
Bra002421
Brassica rapa
Bra002421
I
0.866
Bo01002s040
Brassica oleracea
Bo01002s040
I
0.866
WRKY38
Arabidopsis thaliana
AT5G22570
D
0.862
WRKY38
Arabidopsis lyrata
scaffold_602308.1
I
0.862
Bostr.26527s0018
Boechera stricta
Bostr.26527s0018
I
0.858
Bra028918
Brassica rapa
Bra028918
I
0.854
Thhalv10014700m.g
Eutrema salsugineum
Thhalv10014700m.g
I
0.853
Cagra.15225s0001
Capsella grandiflora
Cagra.15225s0001
I
0.845
Carubv10021420m.g
Capsella rubella
Carubv10021420m.g
I
0.845
Bostr.26959s0262
Boechera stricta
Bostr.26959s0262
I
0.845
Bra023211
Brassica rapa
Bra023211
I
0.844
Al_scaffold_0002_1233
Arabidopsis lyrata
Al_scaffold_0002_1233
I
0.844
Bostr.6251s0160
Boechera stricta
Bostr.6251s0160
I
0.844
Bo5g068250
Brassica oleracea
Bo5g068250
I
0.844
WRKY66
Arabidopsis thaliana
AT1G80590
I
0.841
WRKY67
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2000969
I
0.841
Cagra.0255s0014
Capsella grandiflora
Cagra.0255s0014
I
0.840
Carubv10012720m.g
Capsella rubella
Carubv10012720m.g
I
0.840
WRKY67
Arabidopsis thaliana
AT1G66550
I
0.840
WRKY64
Arabidopsis thaliana
AT1G66560
I
0.838
WRKY62
Arabidopsis lyrata
Al_scaffold_0006_13
I
0.837
WRKY62
Arabidopsis thaliana
AT5G01900
D
0.837
WRKY63
Arabidopsis thaliana
AT1G66600
D
0.834
MTR_8g005750
Medicago truncatula
MTR_8g005750
I
0.833
Carubv10021860m.g
Capsella rubella
Carubv10021860m.g
I
0.832
Ca_18932
Cicer arietinum
Ca_18932
I
0.831
Bostr.26959s0261
Boechera stricta
Bostr.26959s0261
I
0.828
Pavir.Ca00459
Panicum virgatum
Pavir.Ca00459
I
0.826
Carubv10022162m.g
Capsella rubella
Carubv10022162m.g
I
0.825
Carubv10021899m.g
Capsella rubella
Carubv10021899m.g
I
0.825
Bra008454
Brassica rapa
Bra008454
I
0.824
evm.TU.supercontig_86.64
Carica papaya
evm.TU.supercontig_86.64
I
0.822
Cla018337
Citrullus lanatus
Cla018337
I
0.822
Bostr.25463s0359
Boechera stricta
Bostr.25463s0359
I
0.820
MTR_2g075610
Medicago truncatula
MTR_2g075610
I
0.820
MTR_2g075750
Medicago truncatula
MTR_2g075750
I
0.820
evm.TU.supercontig_86.65
Carica papaya
evm.TU.supercontig_86.65
I
0.819
Carubv10022120m.g
Capsella rubella
Carubv10022120m.g
I
0.819
Bra008459
Brassica rapa
Bra008459
I
0.819
Bo2g095820
Brassica oleracea
Bo2g095820
I
0.819
Thhalv10000686m.g
Eutrema salsugineum
Thhalv10000686m.g
I
0.819
Pm003014
Prunus mume
Pm003014
I
0.818
cassava36286.valid.m1
Manihot esculenta
cassava36286.valid.m1
I
0.818
PRUPE_ppa020736mg
Prunus persica
PRUPE_ppa020736mg
I
0.818
Bostr.20129s0455
Boechera stricta
Bostr.20129s0455
I
0.817
Bostr.5022s0087
Boechera stricta
Bostr.5022s0087
I
0.816
TCM_019689
Theobroma cacao
TCM_019689
I
0.816
Thhalv10029232m.g
Eutrema salsugineum
Thhalv10029232m.g
I
0.816
Pm003013
Prunus mume
Pm003013
I
0.815
LPERR05G16170
Leersia perrieri
LPERR05G16170
I
0.815
ONIVA05G21460
Oryza nivara
ONIVA05G21460
I
0.814
OMERI05G18250
Oryza meridionalis
OMERI05G18250
I
0.814
BGIOSGA017860
Oryza indica
BGIOSGA017860
I
0.814
ORUFI05G21600
Oryza rufipogon
ORUFI05G21600
I
0.814
OS05G0478800
Oryza sativa
OS05G0478800
I
0.814
Cucsa.177060
Cucumis sativus
Cucsa.177060
I
0.814
Gorai.005G003900
Gossypium raimondii
Gorai.005G003900
I
0.813
PRUPE_ppa026704mg
Prunus persica
PRUPE_ppa026704mg
I
0.813
PGSC0003DMG400008391
Solanum tuberosum
PGSC0003DMG400008391
I
0.812
MTR_2g075680
Medicago truncatula
MTR_2g075680
I
0.812
GSMUA_Achr8G25110_001
Musa acuminata
GSMUA_Achr8G25110_001
I
0.812
mgf002542m
Mimulus guttatus
mgf002542m
I
0.812
GLYMA13G34261
Glycine max
GLYMA13G34261
I
0.811
Si025181m.g
Setaria italica
Si025181m.g
I
0.811
GLYMA03G00460
Glycine max
GLYMA03G00460
I
0.811
Pm003015
Prunus mume
Pm003015
I
0.811
OB05G17240
Oryza brachyantha
OB05G17240
I
0.810
OB03G26140
Oryza brachyantha
OB03G26140
I
0.810
Bostr.26959s0259
Boechera stricta
Bostr.26959s0259
I
0.810
Cagra.20277s0001
Capsella grandiflora
Cagra.20277s0001
I
0.810
Lus10025216.g
Linum usitatissimum
Lus10025216.g
I
0.809
Bra008456
Brassica rapa
Bra008456
I
0.809
OGLUM05G21470
Oryza glumaepatula
OGLUM05G21470
I
0.809
Ca_12915
Cicer arietinum
Ca_12915
I
0.809
PRUPE_ppa025912mg
Prunus persica
PRUPE_ppa025912mg
I
0.809
OPUNC05G18000
Oryza punctata
OPUNC05G18000
I
0.809
OLONG_027124
Oryza longistaminata
OLONG_027124
I
0.809
OB05G27850
Oryza brachyantha
OB05G27850
I
0.809
POPTR_0016s14490
Populus trichocarpa
POPTR_0016s14490
I
0.808
F775_24185
Aegilops tauschii
F775_24185
I
0.808
MTR_2g075690
Medicago truncatula
MTR_2g075690
I
0.808