CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra031221
(
Brassica rapa
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03106 (WRKY)
IPR003657
Bra031221
T352343_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY59
M07382_2.00
Arabidopsis thaliana
NDWWAGTCAAMN
NKTTGACTWWHN
Dap-seq
OMalley et al.(2016)
WRKY59_col_a
0.887
0.862
WRKY14
M00731_2.00
Arabidopsis thaliana
NRGTCAAMNN
NNKTTGACYN
PBM
Chang et al.(2013)
pTH7570
0.818
0.483
WRKY14
M07375_2.00
Arabidopsis thaliana
NAAAGTCAACGNN
NNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY14_col_a
0.818
0.483
WRKY14
M07376_2.00
Arabidopsis thaliana
NAAAGTCAACGNH
DNCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY14_colamp_a
0.818
0.483
WRKY27
M02566_2.00
Arabidopsis thaliana
NNGTCHDNN
NNHDGACNN
PBM
Weirauch et al.(2014)
pTH8188
0.818
0.466
WRKY27
M07430_2.00
Arabidopsis thaliana
MAAAGTCAACKNH
DNMGTTGACTTTK
Dap-seq
OMalley et al.(2016)
WRKY27_col_a
0.818
0.466
WRKY27
M07431_2.00
Arabidopsis thaliana
HAAAGTCAACKNH
DNMGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY27_colamp_a
0.818
0.466
WRKY22
M02557_2.00
Arabidopsis thaliana
NNNKTMHDNN
NNHDKAMNNN
PBM
Weirauch et al.(2014)
pTH7320
0.817
0.483
WRKY22
M07400_2.00
Arabidopsis thaliana
AAAAGTCAACKNH
DNMGTTGACTTTT
Dap-seq
OMalley et al.(2016)
WRKY22_colamp_a
0.817
0.483
WRKY22
M07401_2.00
Arabidopsis thaliana
NAAAGTCAACKNH
DNMGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY22_col
0.817
0.483
WRKY21
M02553_2.00
Arabidopsis thaliana
NNRGTCAAMN
NKTTGACYNN
PBM
Weirauch et al.(2014)
pTH7422
0.816
0.517
WRKY21
M07389_2.00
Arabidopsis thaliana
HAAAGTCAACNNH
DNNGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_colamp_a
0.816
0.517
WRKY21
M07390_2.00
Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY21_col
0.816
0.517
WRKY29
M02558_2.00
Arabidopsis thaliana
NNNGTCHDNN
NNHDGACNNN
PBM
Weirauch et al.(2014)
pTH9604
0.816
0.483
WRKY29
M07410_2.00
Arabidopsis thaliana
HAAAGTCAACK
MGTTGACTTTD
Dap-seq
OMalley et al.(2016)
WRKY29_col_a
0.816
0.483
WRKY29
M07411_2.00
Arabidopsis thaliana
HWWAGTCAAMDNN
NNHKTTGACTWWD
Dap-seq
OMalley et al.(2016)
WRKY29_colamp_a
0.816
0.483
WRKY65
M07372_2.00
Arabidopsis thaliana
NWWAGTCAACG
CGTTGACTWWN
Dap-seq
OMalley et al.(2016)
WRKY65_col_a
0.815
0.483
WRKY65
M07373_2.00
Arabidopsis thaliana
NAAAGTCAACGN
NCGTTGACTTTN
Dap-seq
OMalley et al.(2016)
WRKY65_colamp_a
0.815
0.483
ZAP1
M00982_2.00
Arabidopsis thaliana
NRGTCAAN
NTTGACYN
PBM
Lindemose et al.(2014)
WRKY1
0.811
0.517
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra031221.1-P
WRKY
106
163
DDGYKWRKYGKKPIRGNPFPRHYHKCSNPNCIVKKKIERDTSNPEYVLTTYEGRHNHP
Links
Other
WRKY
family TFs
Other
Brassica rapa
TFs
680 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Afo_R005725
Aptenodytes forsteri
Afo_R005725
N
0.000
Brh_R013360
Buceros rhinoceros
Brh_R013360
N
0.000
Cmyd_10003651
Chelonia mydas
Cmyd_10003651
N
0.000
KCMF1
Anolis carolinensis
ENSACAG00000005906
N
0.000
ENSAMEG00000002032
Ailuropoda melanoleuca
ENSAMEG00000002032
N
0.000
ENSAMXG00000006684
Astyanax mexicanus
ENSAMXG00000006684
N
0.000
ENSAPLG00000013426
Anas platyrhynchos
ENSAPLG00000013426
N
0.000
KCMF1
Bos taurus
ENSBTAG00000020630
N
0.000
ENSBTAP00000052676-D1
Bos grunniens
ENSBTAP00000052676-D1
N
0.000
KCMF1
Canis familiaris
ENSCAFG00000007871
N
0.000
KCMF1
Choloepus hoffmanni
ENSCHOG00000005786
N
0.000
ENSCJAG00000019735
Callithrix jacchus
ENSCJAG00000019735
N
0.000
kcmf1
Danio rerio
ENSDARG00000067656
N
0.000
KCMF1
Dasypus novemcinctus
ENSDNOG00000047192
N
0.000
ENSDORG00000002248
Dipodomys ordii
ENSDORG00000002248
N
0.000
KCMF1
Equus caballus
ENSECAG00000024834
N
0.000
ENSETEG00000001809
Echinops telfairi
ENSETEG00000001809
N
0.000
ENSFALG00000005137
Ficedula albicollis
ENSFALG00000005137
N
0.000
KCMF1
Felis catus
ENSFCAG00000026410
N
0.000
KCMF1
Homo sapiens
ENSG00000176407
N
0.000
kcmf1
Gasterosteus aculeatus
ENSGACG00000016222
N
0.000
ENSGALG00000014441
Gallus gallus
ENSGALG00000014441
N
0.000
KCMF1
Gorilla gorilla
ENSGGOG00000009501
N
0.000
ENSGMOG00000014478
Gadus morhua
ENSGMOG00000014478
N
0.000
KCMF1
Loxodonta africana
ENSLAFG00000018643
N
0.000
ENSLOCG00000011313
Lepisosteus oculatus
ENSLOCG00000011313
N
0.000
ENSMEUG00000003898
Macropus eugenii
ENSMEUG00000003898
N
0.000
KCMF1
Microcebus murinus
ENSMICG00000016473
N
0.000
KCMF1
Myotis lucifugus
ENSMLUG00000000979
N
0.000
KCMF1
Macaca mulatta
ENSMMUG00000001414
N
0.000
KCMF1
Monodelphis domestica
ENSMODG00000015567
N
0.000
ENSMPUG00000008632
Mustela putorius furo
ENSMPUG00000008632
N
0.000
Kcmf1
Mus musculus
ENSMUSG00000055239
N
0.000
ENSNLEG00000001418
Nomascus leucogenys
ENSNLEG00000001418
N
0.000
KCMF1
Ornithorhynchus anatinus
ENSOANG00000007129
N
0.000
ENSOARG00000020445
Ovis aries
ENSOARG00000020445
N
0.000
KCMF1
Oryctolagus cuniculus
ENSOCUG00000002533
N
0.000
KCMF1
Otolemur garnettii
ENSOGAG00000034863
N
0.000
KCMF1
Ochotona princeps
ENSOPRG00000009018
N
0.000
ENSPANG00000007610
Papio anubis
ENSPANG00000007610
N
0.000
KCMF1
Procavia capensis
ENSPCAG00000008538
N
0.000
ENSPPYG00000012235
Pongo abelii
ENSPPYG00000012235
N
0.000
ENSPSIG00000012230
Pelodiscus sinensis
ENSPSIG00000012230
N
0.000
KCMF1
Pan troglodytes
ENSPTRG00000012127
N
0.000
KCMF1
Pteropus vampyrus
ENSPVAG00000009122
N
0.000
Kcmf1
Rattus norvegicus
ENSRNOG00000015097
N
0.000
ENSSHAG00000009198
Sarcophilus harrisii
ENSSHAG00000009198
N
0.000
KCMF1
Sus scrofa
ENSSSCG00000008242
N
0.000
ENSSTOG00000021528
Ictidomys tridecemlineatus
ENSSTOG00000021528
N
0.000
KCMF1
Tupaia belangeri
ENSTBEG00000016438
N
0.000
KCMF1
Taeniopygia guttata
ENSTGUG00000000265
N
0.000
ENSTSYG00000009776
Tarsius syrichta
ENSTSYG00000009776
N
0.000
KCMF1
Tursiops truncatus
ENSTTRG00000001934
N
0.000
Gfo_R004112
Geospiza fortis
Gfo_R004112
N
0.000
Gfo_R013520
Geospiza fortis
Gfo_R013520
N
0.000
Pvit_16118
Pogona vitticeps
Pvit_16118
N
0.000
Tal_R012527
Tyto alba
Tal_R012527
N
0.000
kcmf1
Xenopus tropicalis
XB-GENE-1021676
N
0.000
kcmf1.L
Xenopus laevis
XB-GENE-1021681
N
0.000