CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra031221 *(Brassica rapa)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03106 (WRKY)	IPR003657	Bra031221	T352343_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY59 M07382_2.00	Arabidopsis thaliana	NDWWAGTCAAMN	NKTTGACTWWHN	Dap-seq OMalley et al.(2016) WRKY59_col_a	0.887	0.862
WRKY14 M00731_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Chang et al.(2013) pTH7570	0.818	0.483
WRKY14 M07375_2.00	Arabidopsis thaliana	NAAAGTCAACGNN	NNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_col_a	0.818	0.483
WRKY14 M07376_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_colamp_a	0.818	0.483
WRKY27 M02566_2.00	Arabidopsis thaliana	NNGTCHDNN	NNHDGACNN	PBM Weirauch et al.(2014) pTH8188	0.818	0.466
WRKY27 M07430_2.00	Arabidopsis thaliana	MAAAGTCAACKNH	DNMGTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY27_col_a	0.818	0.466
WRKY27 M07431_2.00	Arabidopsis thaliana	HAAAGTCAACKNH	DNMGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY27_colamp_a	0.818	0.466
WRKY22 M02557_2.00	Arabidopsis thaliana	NNNKTMHDNN	NNHDKAMNNN	PBM Weirauch et al.(2014) pTH7320	0.817	0.483
WRKY22 M07400_2.00	Arabidopsis thaliana	AAAAGTCAACKNH	DNMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY22_colamp_a	0.817	0.483
WRKY22 M07401_2.00	Arabidopsis thaliana	NAAAGTCAACKNH	DNMGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY22_col	0.817	0.483
WRKY21 M02553_2.00	Arabidopsis thaliana	NNRGTCAAMN	NKTTGACYNN	PBM Weirauch et al.(2014) pTH7422	0.816	0.517
WRKY21 M07389_2.00	Arabidopsis thaliana	HAAAGTCAACNNH	DNNGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_colamp_a	0.816	0.517
WRKY21 M07390_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_col	0.816	0.517
WRKY29 M02558_2.00	Arabidopsis thaliana	NNNGTCHDNN	NNHDGACNNN	PBM Weirauch et al.(2014) pTH9604	0.816	0.483
WRKY29 M07410_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY29_col_a	0.816	0.483
WRKY29 M07411_2.00	Arabidopsis thaliana	HWWAGTCAAMDNN	NNHKTTGACTWWD	Dap-seq OMalley et al.(2016) WRKY29_colamp_a	0.816	0.483
WRKY65 M07372_2.00	Arabidopsis thaliana	NWWAGTCAACG	CGTTGACTWWN	Dap-seq OMalley et al.(2016) WRKY65_col_a	0.815	0.483
WRKY65 M07373_2.00	Arabidopsis thaliana	NAAAGTCAACGN	NCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY65_colamp_a	0.815	0.483
ZAP1 M00982_2.00	Arabidopsis thaliana	NRGTCAAN	NTTGACYN	PBM Lindemose et al.(2014) WRKY1	0.811	0.517
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra031221.1-P	WRKY	106	163	DDGYKWRKYGKKPIRGNPFPRHYHKCSNPNCIVKKKIERDTSNPEYVLTTYEGRHNHP

Links
Other WRKY family TFs
Other *Brassica rapa* TFs

680 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Afo_R005725	Aptenodytes forsteri	Afo_R005725	N	0.000
Brh_R013360	Buceros rhinoceros	Brh_R013360	N	0.000
Cmyd_10003651	Chelonia mydas	Cmyd_10003651	N	0.000
KCMF1	Anolis carolinensis	ENSACAG00000005906	N	0.000
ENSAMEG00000002032	Ailuropoda melanoleuca	ENSAMEG00000002032	N	0.000
ENSAMXG00000006684	Astyanax mexicanus	ENSAMXG00000006684	N	0.000
ENSAPLG00000013426	Anas platyrhynchos	ENSAPLG00000013426	N	0.000
KCMF1	Bos taurus	ENSBTAG00000020630	N	0.000
ENSBTAP00000052676-D1	Bos grunniens	ENSBTAP00000052676-D1	N	0.000
KCMF1	Canis familiaris	ENSCAFG00000007871	N	0.000
KCMF1	Choloepus hoffmanni	ENSCHOG00000005786	N	0.000
ENSCJAG00000019735	Callithrix jacchus	ENSCJAG00000019735	N	0.000
kcmf1	Danio rerio	ENSDARG00000067656	N	0.000
KCMF1	Dasypus novemcinctus	ENSDNOG00000047192	N	0.000
ENSDORG00000002248	Dipodomys ordii	ENSDORG00000002248	N	0.000
KCMF1	Equus caballus	ENSECAG00000024834	N	0.000
ENSETEG00000001809	Echinops telfairi	ENSETEG00000001809	N	0.000
ENSFALG00000005137	Ficedula albicollis	ENSFALG00000005137	N	0.000
KCMF1	Felis catus	ENSFCAG00000026410	N	0.000
KCMF1	Homo sapiens	ENSG00000176407	N	0.000
kcmf1	Gasterosteus aculeatus	ENSGACG00000016222	N	0.000
ENSGALG00000014441	Gallus gallus	ENSGALG00000014441	N	0.000
KCMF1	Gorilla gorilla	ENSGGOG00000009501	N	0.000
ENSGMOG00000014478	Gadus morhua	ENSGMOG00000014478	N	0.000
KCMF1	Loxodonta africana	ENSLAFG00000018643	N	0.000
ENSLOCG00000011313	Lepisosteus oculatus	ENSLOCG00000011313	N	0.000
ENSMEUG00000003898	Macropus eugenii	ENSMEUG00000003898	N	0.000
KCMF1	Microcebus murinus	ENSMICG00000016473	N	0.000
KCMF1	Myotis lucifugus	ENSMLUG00000000979	N	0.000
KCMF1	Macaca mulatta	ENSMMUG00000001414	N	0.000
KCMF1	Monodelphis domestica	ENSMODG00000015567	N	0.000
ENSMPUG00000008632	Mustela putorius furo	ENSMPUG00000008632	N	0.000
Kcmf1	Mus musculus	ENSMUSG00000055239	N	0.000
ENSNLEG00000001418	Nomascus leucogenys	ENSNLEG00000001418	N	0.000
KCMF1	Ornithorhynchus anatinus	ENSOANG00000007129	N	0.000
ENSOARG00000020445	Ovis aries	ENSOARG00000020445	N	0.000
KCMF1	Oryctolagus cuniculus	ENSOCUG00000002533	N	0.000
KCMF1	Otolemur garnettii	ENSOGAG00000034863	N	0.000
KCMF1	Ochotona princeps	ENSOPRG00000009018	N	0.000
ENSPANG00000007610	Papio anubis	ENSPANG00000007610	N	0.000
KCMF1	Procavia capensis	ENSPCAG00000008538	N	0.000
ENSPPYG00000012235	Pongo abelii	ENSPPYG00000012235	N	0.000
ENSPSIG00000012230	Pelodiscus sinensis	ENSPSIG00000012230	N	0.000
KCMF1	Pan troglodytes	ENSPTRG00000012127	N	0.000
KCMF1	Pteropus vampyrus	ENSPVAG00000009122	N	0.000
Kcmf1	Rattus norvegicus	ENSRNOG00000015097	N	0.000
ENSSHAG00000009198	Sarcophilus harrisii	ENSSHAG00000009198	N	0.000
KCMF1	Sus scrofa	ENSSSCG00000008242	N	0.000
ENSSTOG00000021528	Ictidomys tridecemlineatus	ENSSTOG00000021528	N	0.000
KCMF1	Tupaia belangeri	ENSTBEG00000016438	N	0.000
KCMF1	Taeniopygia guttata	ENSTGUG00000000265	N	0.000
ENSTSYG00000009776	Tarsius syrichta	ENSTSYG00000009776	N	0.000
KCMF1	Tursiops truncatus	ENSTTRG00000001934	N	0.000
Gfo_R004112	Geospiza fortis	Gfo_R004112	N	0.000
Gfo_R013520	Geospiza fortis	Gfo_R013520	N	0.000
Pvit_16118	Pogona vitticeps	Pvit_16118	N	0.000
Tal_R012527	Tyto alba	Tal_R012527	N	0.000
kcmf1	Xenopus tropicalis	XB-GENE-1021676	N	0.000
kcmf1.L	Xenopus laevis	XB-GENE-1021681	N	0.000

Bra031221 (Brassica rapa) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

680 Related TFs

Bra031221 **(Brassica rapa)
WRKY**